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Test run fails to execute correctly #16

Open bistace opened 3 years ago

bistace commented 3 years ago

Hi,

I downloaded the new version of the pipeline and reinstalled it from the start to make sure everything was updated. I tried running the test command you provide in the readme: snakemake --use-conda test -j 4 --config=output_dir=results.test

However, the run fails with the following log:

Building DAG of jobs...
Creating conda environment envs/cooler.yml...
Downloading and installing remote packages.
Environment for envs/cooler.yml created (location: .snakemake/conda/4dd49be2)
Creating conda environment envs/pore_c.yml...
Downloading and installing remote packages.
Environment for envs/pore_c.yml created (location: .snakemake/conda/282227d6)
Creating conda environment envs/pairix.yml...
Downloading and installing remote packages.
Environment for envs/pairix.yml created (location: .snakemake/conda/7f13aeff)
Creating conda environment envs/juicer_tools.yml...
Downloading and installing remote packages.
Environment for envs/juicer_tools.yml created (location: .snakemake/conda/8e0b2634)
Creating conda environment envs/pairtools.yml...
Downloading and installing remote packages.
Environment for envs/pairtools.yml created (location: .snakemake/conda/168f9fd7)
Using shell: /bin/bash
Provided cores: 4
Rules claiming more threads will be scaled down.
Job counts:
        count   jobs
        4       add_refgenome
        8       create_contact_fofn
        8       create_hic
        8       create_hicRef
        8       create_mcool_file
        1       download_juicer_tools
        3       import_basecalls
        8       index_pairs
        8       merge_contact_files
        8       summarise_contacts
        1       test
        8       to_cooler
        8       to_mnd
        8       to_salsa_bed
        8       to_sorted_pairs
        8       to_unsorted_pairs
        8       virtual_digest
        113

[Thu Jan 14 14:28:56 2021]
checkpoint import_basecalls:
    output: results.test/basecall/NlaIII_NlaIII.rd.catalog.yaml, results.test/basecall/NlaIII_NlaIII.rd.summary.csv, results.test/basecall/NlaIII_NlaIII.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_NlaIII.rd.catalog.yaml.log
    jobid: 56
    benchmark: results.test/benchmarks/results.test/basecall/NlaIII_NlaIII.rd.catalog.yaml.bench.txt
    wildcards: enzyme=NlaIII, run_id=NlaIII
Downstream jobs will be updated after completion.

InputFunctionException in line 1 of /home/bistace/porec/Pore-C-Snakemake/rules/reads.smk:
KeyError: 'NlaIII'
Wildcards:
enzyme=NlaIII
run_id=NlaIII
  File "/home/bistace/anaconda3/envs/pore-c-snakemake/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 111, in run_jobs
  File "/home/bistace/anaconda3/envs/pore-c-snakemake/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 402, in run
  File "/home/bistace/anaconda3/envs/pore-c-snakemake/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 203, in _run
  File "/home/bistace/anaconda3/envs/pore-c-snakemake/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 131, in _run
  File "/home/bistace/anaconda3/envs/pore-c-snakemake/lib/python3.8/site-packages/snakemake/executors/__init__.py", line 137, in printjob

Could you please help me solve this issue?

eharr commented 3 years ago

Hi,

I just tried the test pipeline on a fresh checkout and it worked fine. The error you're seeing suggests that the basecalls.tsv config file has been modified - for the tests to run all of the files under the config directory need to match those in the git repository. Can you check to see if that's the case?

Thanks, Eoghan

bistace commented 3 years ago

Hi,

you were right, some files must have been altered and the pipeline was not correctly reinstalled. I removed entirely the folder and conda env and installed the new version. However, I am still getting errors, here is the log:

Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 4
Rules claiming more threads will be scaled down.
Job counts:
        count   jobs
        2       add_refgenome
        2       create_contact_fofn
        2       create_hic
        2       create_hicRef
        2       create_mcool_file
        2       import_basecalls
        2       index_pairs
        2       merge_contact_files
        2       summarise_contacts
        1       test
        2       to_cooler
        2       to_mnd
        2       to_salsa_bed
        2       to_sorted_pairs
        2       to_unsorted_pairs
        2       virtual_digest
        31

[Fri Jan 15 08:39:36 2021]
checkpoint import_basecalls:
    output: results.test/basecall/NlaIII_run02.rd.catalog.yaml, results.test/basecall/NlaIII_run02.rd.summary.csv, results.test/basecall/NlaIII_run02.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log
    jobid: 16
    benchmark: results.test/benchmarks/results.test/basecall/NlaIII_run02.rd.catalog.yaml.bench.txt
    wildcards: enzyme=NlaIII, run_id=run02
Downstream jobs will be updated after completion.

[Fri Jan 15 08:39:36 2021]
checkpoint import_basecalls:
    output: results.test/basecall/NlaIII_run01.rd.catalog.yaml, results.test/basecall/NlaIII_run01.rd.summary.csv, results.test/basecall/NlaIII_run01.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log
    jobid: 14
    benchmark: results.test/benchmarks/results.test/basecall/NlaIII_run01.rd.catalog.yaml.bench.txt
    wildcards: enzyme=NlaIII, run_id=run01
Downstream jobs will be updated after completion.

Activating conda environment: /home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6
Activating conda environment: /home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6
[Fri Jan 15 08:39:38 2021]
Error in rule import_basecalls:
    jobid: 16
    output: results.test/basecall/NlaIII_run02.rd.catalog.yaml, results.test/basecall/NlaIII_run02.rd.summary.csv, results.test/basecall/NlaIII_run02.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log (check log file(s) for error message)
    conda-env: /home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6
    shell:
        pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare .test/resources/GM12878_NlaIII_reads.fq.gz results.test/basecall/NlaIII_run02.rd --max-read-length 100000  --batch-size 50000 2> results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

[Fri Jan 15 08:39:38 2021]
Error in rule import_basecalls:
    jobid: 14
    output: results.test/basecall/NlaIII_run01.rd.catalog.yaml, results.test/basecall/NlaIII_run01.rd.summary.csv, results.test/basecall/NlaIII_run01.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log (check log file(s) for error message)
    conda-env: /home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6
    shell:
        pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare .test/resources/GM12878_NlaIII_reads.fq.gz results.test/basecall/NlaIII_run01.rd --max-read-length 100000  --batch-size 50000 2> results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /home/bistace/porec/Pore-C-Snakemake/.snakemake/log/2021-01-15T083936.170916.snakemake.log

The log file contains this error:

Reads processed: 0 reads [00:00, ? reads/s]Traceback (most recent call last):
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/bin/pore_c", line 10, in <module>
    sys.exit(cli())
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/click/decorators.py", line 17, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/pore_c/cli.py", line 281, in prepare
    **path_kwds,
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/pore_c/analyses/reads.py", line 70, in prepare_fastq
    metadata_df = pd.concat(df_sink, ignore_index=True)
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/pandas/core/reshape/concat.py", line 295, in concat
    sort=sort,
  File "/home/bistace/porec/Pore-C-Snakemake/.snakemake/conda/282227d6/lib/python3.7/site-packages/pandas/core/reshape/concat.py", line 342, in __init__
    raise ValueError("No objects to concatenate")
ValueError: No objects to concatenate
Reads processed: 0 reads [00:00, ? reads/s]
dikkeaap commented 3 years ago

Hi,

I have the exact same issue as the last one reported here. I downloaded the latest code (i.e. https://github.com/nanoporetech/Pore-C-Snakemake/commit/5e6c3061865c2dbb95167e502ca7c4c07e0833c3 ) and ran the test as instructed:

snakemake --use-conda test -j 4 --config=output_dir=results.test

This resulted in the the following output:

Creating conda environment envs/pairix.yml...
Downloading remote packages.
Environment for envs/pairix.yml created (location: .snakemake/conda/702cb256)
Creating conda environment envs/pairtools.yml...
Downloading remote packages.
Environment for envs/pairtools.yml created (location: .snakemake/conda/ce8e0c48)
Creating conda environment envs/pore_c.yml...
Downloading remote packages.
Environment for envs/pore_c.yml created (location: .snakemake/conda/e152fdc0)
Creating conda environment envs/juicer_tools.yml...
Downloading remote packages.
Environment for envs/juicer_tools.yml created (location: .snakemake/conda/9e11e0a1)
Creating conda environment envs/cooler.yml...
Downloading remote packages.
Environment for envs/cooler.yml created (location: .snakemake/conda/11ad2ba6)
Using shell: /bin/bash
Provided cores: 4
Rules claiming more threads will be scaled down.
Job counts:
        count   jobs
        2       add_refgenome
        2       create_contact_fofn
        2       create_hic
        2       create_hicRef
        2       create_mcool_file
        1       download_juicer_tools
        2       import_basecalls
        2       index_pairs
        2       merge_contact_files
        2       summarise_contacts
        1       test
        2       to_cooler
        2       to_mnd
        2       to_salsa_bed
        2       to_sorted_pairs
        2       to_unsorted_pairs
        2       virtual_digest
        32

[Tue Jan 19 12:04:09 2021]
checkpoint import_basecalls:
    output: results.test/basecall/NlaIII_run02.rd.catalog.yaml, results.test/basecall/NlaIII_run02.rd.summary.csv, results.test/basecall/NlaIII_run02.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log
    jobid: 16
    benchmark: results.test/benchmarks/results.test/basecall/NlaIII_run02.rd.catalog.yaml.bench.txt
    wildcards: enzyme=NlaIII, run_id=run02
Downstream jobs will be updated after completion.

[Tue Jan 19 12:04:09 2021]
checkpoint import_basecalls:
    output: results.test/basecall/NlaIII_run01.rd.catalog.yaml, results.test/basecall/NlaIII_run01.rd.summary.csv, results.test/basecall/NlaIII_run01.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log
    jobid: 14
    benchmark: results.test/benchmarks/results.test/basecall/NlaIII_run01.rd.catalog.yaml.bench.txt
    wildcards: enzyme=NlaIII, run_id=run01
Downstream jobs will be updated after completion.

[Tue Jan 19 12:04:09 2021]
rule download_juicer_tools:
    output: results.test/juicebox/juicer_tools.jar
    log: results.test/logs/results.test/juicebox/juicer_tools.jar.log
    jobid: 23

Activating conda environment: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/9e11e0a1
Activating conda environment: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
Activating conda environment: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
[Tue Jan 19 12:04:31 2021]
[Tue Jan 19 12:04:31 2021]
Error in rule import_basecalls:
Error in rule import_basecalls:
    jobid: 16
    jobid: 14
    output: results.test/basecall/NlaIII_run02.rd.catalog.yaml, results.test/basecall/NlaIII_run02.rd.summary.csv, results.test/basecall/NlaIII_run02.rd.read_metadata.parquet
    output: results.test/basecall/NlaIII_run01.rd.catalog.yaml, results.test/basecall/NlaIII_run01.rd.summary.csv, results.test/basecall/NlaIII_run01.rd.read_metadata.parquet
    log: results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log (check log file(s) for error message)
    log: results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log (check log file(s) for error message)
    conda-env: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
    conda-env: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
    shell:
        pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare .test/resources/GM12878_NlaIII_reads.fq.gz results.test/basecall/NlaIII_run02.rd --max-read-length 100000  --batch-size 50000 2> results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log
        (exited with non-zero exit code)
    shell:
        pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare .test/resources/GM12878_NlaIII_reads.fq.gz results.test/basecall/NlaIII_run01.rd --max-read-length 100000  --batch-size 50000 2> results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log
        (exited with non-zero exit code)

[Tue Jan 19 12:05:02 2021]
Finished job 23.
1 of 32 steps (3%) done
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/log/2021-01-19T114909.480841.snakemake.log

The specific error log results.test/logs/results.test/basecall/NlaIII_run01.rd.catalog.yaml.log shows

  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/bin/pore_c", line 10, in <module>
    sys.exit(cli())
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/click/decorators.py", line 17, in new_func
    return f(get_current_context(), *args, **kwargs)
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/pore_c/cli.py", line 281, in prepare
    **path_kwds,
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/pore_c/analyses/reads.py", line 70, in prepare_fastq
    metadata_df = pd.concat(df_sink, ignore_index=True)
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/pandas/core/reshape/concat.py", line 295, in concat
    sort=sort,
  File "/data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0/lib/python3.7/site-packages/pandas/core/reshape/concat.py", line 342, in __init__
    raise ValueError("No objects to concatenate")
ValueError: No objects to concatenate
Reads processed: 0 reads [00:00, ? reads/s]

In addition, when running the pipeline on my own data, I also get a related error on the same step. I edited the appropriate config files and ran the following

snakemake --use-conda --cores 80 salsa juicer

This gave the following output:

Using shell: /bin/bash
Provided cores: 80
Rules claiming more threads will be scaled down.
Job counts:
        count   jobs
        2       create_contact_fofn
        2       create_hic
        2       import_basecalls
        1       juicer
        2       merge_contact_files
        1       salsa
        2       to_salsa_bed
        2       to_sorted_pairs
        2       to_unsorted_pairs
        16

[Mon Jan 18 15:44:16 2021]
checkpoint import_basecalls:
    output: results/basecall/DpnII_run02.rd.catalog.yaml, results/basecall/DpnII_run02.rd.summary.csv, results/basecall/DpnII_run02.rd.read_metadata.parquet
    log: results/logs/results/basecall/DpnII_run02.rd.catalog.yaml.log
    jobid: 19
    benchmark: results/benchmarks/results/basecall/DpnII_run02.rd.catalog.yaml.bench.txt
    wildcards: enzyme=DpnII, run_id=run02
Downstream jobs will be updated after completion.

[Mon Jan 18 15:44:16 2021]
checkpoint import_basecalls:
    output: results/basecall/DpnII_run01.rd.catalog.yaml, results/basecall/DpnII_run01.rd.summary.csv, results/basecall/DpnII_run01.rd.read_metadata.parquet
    log: results/logs/results/basecall/DpnII_run01.rd.catalog.yaml.log
    jobid: 18
    benchmark: results/benchmarks/results/basecall/DpnII_run01.rd.catalog.yaml.bench.txt
    wildcards: enzyme=DpnII, run_id=run01
Downstream jobs will be updated after completion.

Activating conda environment: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
Activating conda environment: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
^CTerminating processes on user request, this might take some time.
[Tue Jan 19 10:26:54 2021]
Error in rule import_basecalls:
    jobid: 19
    output: results/basecall/DpnII_run02.rd.catalog.yaml, results/basecall/DpnII_run02.rd.summary.csv, results/basecall/DpnII_run02.rd.read_metadata.parquet
    log: results/logs/results/basecall/DpnII_run02.rd.catalog.yaml.log (check log file(s) for error message)
    conda-env: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
    shell:
        pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare /data/sag/2020/EDa_20010056_porec/renamed/FAO63853rb.fastq results/basecall/DpnII_run02.rd --max-read-length 100000  --batch-size 50000 2> results/logs/results/basecall/DpnII_run02.rd.catalog.yaml.log
        (exited with non-zero exit code)

[Tue Jan 19 10:26:54 2021]
Error in rule import_basecalls:
    jobid: 18
    output: results/basecall/DpnII_run01.rd.catalog.yaml, results/basecall/DpnII_run01.rd.summary.csv, results/basecall/DpnII_run01.rd.read_metadata.parquet
    log: results/logs/results/basecall/DpnII_run01.rd.catalog.yaml.log (check log file(s) for error message)
    conda-env: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/conda/e152fdc0
    shell:
        pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare /data/sag/2020/EDa_20010056_porec/renamed/FAO62992rb.fastq results/basecall/DpnII_run01.rd --max-read-length 100000  --batch-size 50000 2> results/logs/results/basecall/DpnII_run01.rd.catalog.yaml.log
        (exited with non-zero exit code)

Complete log: /data/interos/eda/tools/Pore-C-Snakemake/.snakemake/log/2021-01-18T154415.785278.snakemake.log

However, I can't find any error in the logs, e.g. results/logs/results/basecall/DpnII_run01.rd.catalog.yaml.log : 

Reads processed: 100000 reads [00:10, 9011.37 reads/s, read_length=6.67e+7, pass_filter=5e+4, reads=5e+4, Gb=0.0667, perReads processed: 100000 reads [00:10, 9011.37 reads/s, read_length=1.34e+8, pass_filter=1e+5, reads=1e+5, Gb=0.134, perc_pass=100] 2021-01-19 10:33:57,561 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch2.fq using bgzip
Reads processed: 150000 reads [00:19, 7051.38 reads/s, read_length=1.34e+8, pass_filter=1e+5, reads=1e+5, Gb=0.134, percReads processed: 150000 reads [00:19, 7051.38 reads/s, read_length=2.02e+8, pass_filter=1.5e+5, reads=1.5e+5, Gb=0.202, perc_pass=100]2021-01-19 10:34:06,260 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch3.fq using bgzip
Reads processed: 200000 reads [00:27, 6830.41 reads/s, read_length=2.02e+8, pass_filter=1.5e+5, reads=1.5e+5, Gb=0.202, Reads processed: 200000 reads [00:27, 6830.41 reads/s, read_length=2.7e+8, pass_filter=2e+5, reads=2e+5, Gb=0.27, perc_pass=100]      2021-01-19 10:34:13,909 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch4.fq using bgzip
Reads processed: 250000 reads [00:34, 6677.41 reads/s, read_length=2.7e+8, pass_filter=2e+5, reads=2e+5, Gb=0.27, perc_pReads processed: 250000 reads [00:34, 6677.41 reads/s, read_length=3.36e+8, pass_filter=2.5e+5, reads=2.5e+5, Gb=0.336, perc_pass=100]2021-01-19 10:34:21,735 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch5.fq using bgzip
Reads processed: 300000 reads [00:41, 6835.56 reads/s, read_length=3.36e+8, pass_filter=2.5e+5, reads=2.5e+5, Gb=0.336, Reads processed: 300000 reads [00:41, 6835.56 reads/s, read_length=4.03e+8, pass_filter=3e+5, reads=3e+5, Gb=0.403, perc_pass=100]    2021-01-19 10:34:28,603 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch6.fq using bgzip
Reads processed: 350000 reads [00:48, 7030.75 reads/s, read_length=4.03e+8, pass_filter=3e+5, reads=3e+5, Gb=0.403, percReads processed: 350000 reads [00:48, 7030.75 reads/s, read_length=4.69e+8, pass_filter=3.5e+5, reads=3.5e+5, Gb=0.469, perc_pass=100]2021-01-19 10:34:35,374 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch7.fq using bgzip
Reads processed: 400000 reads [00:54, 7252.30 reads/s, read_length=4.69e+8, pass_filter=3.5e+5, reads=3.5e+5, Gb=0.469, Reads processed: 400000 reads [00:54, 7252.30 reads/s, read_length=5.36e+8, pass_filter=4e+5, reads=4e+5, Gb=0.536, perc_pass=100]    2021-01-19 10:34:41,764 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch8.fq using bgzip
Reads processed: 450000 reads [01:01, 7329.44 reads/s, read_length=5.36e+8, pass_filter=4e+5, reads=4e+5, Gb=0.536, percReads processed: 450000 reads [01:01, 7329.44 reads/s, read_length=6.04e+8, pass_filter=4.5e+5, reads=4.5e+5, Gb=0.604, perc_pass=100]2021-01-19 10:34:48,482 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch9.fq using bgzip
Reads processed: 500000 reads [01:08, 7360.93 reads/s, read_length=6.04e+8, pass_filter=4.5e+5, reads=4.5e+5, Gb=0.604, Reads processed: 500000 reads [01:08, 7360.93 reads/s, read_length=6.71e+8, pass_filter=5e+5, reads=5e+5, Gb=0.671, perc_pass=100]    2021-01-19 10:34:55,176 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch10.fq using bgzip
Reads processed: 550000 reads [01:14, 7464.12 reads/s, read_length=6.71e+8, pass_filter=5e+5, reads=5e+5, Gb=0.671, percReads processed: 550000 reads [01:14, 7464.12 reads/s, read_length=7.38e+8, pass_filter=5.5e+5, reads=5.5e+5, Gb=0.738, perc_pass=100]2021-01-19 10:35:01,753 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch11.fq using bgzip
Reads processed: 600000 reads [01:21, 7373.76 reads/s, read_length=7.38e+8, pass_filter=5.5e+5, reads=5.5e+5, Gb=0.738, Reads processed: 600000 reads [01:21, 7373.76 reads/s, read_length=8.06e+8, pass_filter=6e+5, reads=6e+5, Gb=0.806, perc_pass=100]    2021-01-19 10:35:08,598 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch12.fq using bgzip
Reads processed: 650000 reads [01:28, 7367.35 reads/s, read_length=8.06e+8, pass_filter=6e+5, reads=6e+5, Gb=0.806, percReads processed: 650000 reads [01:28, 7367.35 reads/s, read_length=8.72e+8, pass_filter=6.5e+5, reads=6.5e+5, Gb=0.872, perc_pass=100]2021-01-19 10:35:15,445 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch13.fq using bgzip
Reads processed: 700000 reads [01:35, 7453.64 reads/s, read_length=8.72e+8, pass_filter=6.5e+5, reads=6.5e+5, Gb=0.872, Reads processed: 700000 reads [01:35, 7453.64 reads/s, read_length=9.4e+8, pass_filter=7e+5, reads=7e+5, Gb=0.94, perc_pass=100]      2021-01-19 10:35:22,043 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch14.fq using bgzip
Reads processed: 750000 reads [01:41, 7398.04 reads/s, read_length=9.4e+8, pass_filter=7e+5, reads=7e+5, Gb=0.94, perc_pReads processed: 750000 reads [01:42, 7398.04 reads/s, read_length=1.01e+9, pass_filter=7.5e+5, reads=7.5e+5, Gb=1.01, perc_pass=100]2021-01-19 10:35:29,023 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch15.fq using bgzip
Reads processed: 800000 reads [01:48, 7363.24 reads/s, read_length=1.01e+9, pass_filter=7.5e+5, reads=7.5e+5, Gb=1.01, pReads processed: 800000 reads [01:48, 7363.24 reads/s, read_length=1.07e+9, pass_filter=8e+5, reads=8e+5, Gb=1.07, perc_pass=100]    2021-01-19 10:35:35,656 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch16.fq using bgzip
Reads processed: 850000 reads [01:55, 7488.87 reads/s, read_length=1.07e+9, pass_filter=8e+5, reads=8e+5, Gb=1.07, perc_Reads processed: 850000 reads [01:55, 7488.87 reads/s, read_length=1.14e+9, pass_filter=8.5e+5, reads=8.5e+5, Gb=1.14, perc_pass=100]2021-01-19 10:35:42,128 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch17.fq using bgzip
Reads processed: 900000 reads [02:02, 7457.12 reads/s, read_length=1.14e+9, pass_filter=8.5e+5, reads=8.5e+5, Gb=1.14, pReads processed: 900000 reads [02:02, 7457.12 reads/s, read_length=1.21e+9, pass_filter=9e+5, reads=9e+5, Gb=1.21, perc_pass=100]    2021-01-19 10:35:48,940 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch18.fq using bgzip
Reads processed: 950000 reads [02:08, 7425.33 reads/s, read_length=1.21e+9, pass_filter=9e+5, reads=9e+5, Gb=1.21, perc_Reads processed: 950000 reads [02:08, 7425.33 reads/s, read_length=1.28e+9, pass_filter=9.5e+5, reads=9.5e+5, Gb=1.28, perc_pass=100]2021-01-19 10:35:55,658 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch19.fq using bgzip
Reads processed: 1000000 reads [02:15, 7500.14 reads/s, read_length=1.28e+9, pass_filter=9.5e+5, reads=9.5e+5, Gb=1.28, Reads processed: 1000000 reads [02:15, 7500.14 reads/s, read_length=1.34e+9, pass_filter=1e+6, reads=1e+6, Gb=1.34, perc_pass=100]    2021-01-19 10:36:02,183 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch20.fq using bgzip
Reads processed: 1050000 reads [02:22, 7429.33 reads/s, read_length=1.34e+9, pass_filter=1e+6, reads=1e+6, Gb=1.34, percReads processed: 1050000 reads [02:22, 7429.33 reads/s, read_length=1.41e+9, pass_filter=1.05e+6, reads=1.05e+6, Gb=1.41, perc_pass=100]2021-01-19 10:36:09,012 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch21.fq using bgzip
Reads processed: 1100000 reads [02:28, 7436.09 reads/s, read_length=1.41e+9, pass_filter=1.05e+6, reads=1.05e+6, Gb=1.41Reads processed: 1100000 reads [02:28, 7436.09 reads/s, read_length=1.48e+9, pass_filter=1.1e+6, reads=1.1e+6, Gb=1.48, perc_pass=100]  2021-01-19 10:36:15,890 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch22.fq using bgzip
Reads processed: 1150000 reads [02:35, 7476.38 reads/s, read_length=1.48e+9, pass_filter=1.1e+6, reads=1.1e+6, Gb=1.48, Reads processed: 1150000 reads [02:35, 7476.38 reads/s, read_length=1.54e+9, pass_filter=1.15e+6, reads=1.15e+6, Gb=1.54, perc_pass=100]2021-01-19 10:36:22,498 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch23.fq using bgzip
Reads processed: 1200000 reads [02:42, 7420.82 reads/s, read_length=1.54e+9, pass_filter=1.15e+6, reads=1.15e+6, Gb=1.54Reads processed: 1200000 reads [02:42, 7420.82 reads/s, read_length=1.61e+9, pass_filter=1.2e+6, reads=1.2e+6, Gb=1.61, perc_pass=100]  2021-01-19 10:36:29,271 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch24.fq using bgzip
Reads processed: 1250000 reads [02:49, 7409.17 reads/s, read_length=1.61e+9, pass_filter=1.2e+6, reads=1.2e+6, Gb=1.61, Reads processed: 1250000 reads [02:49, 7409.17 reads/s, read_length=1.68e+9, pass_filter=1.25e+6, reads=1.25e+6, Gb=1.68, perc_pass=100]2021-01-19 10:36:36,098 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch25.fq using bgzip
Reads processed: 1300000 reads [02:55, 7487.51 reads/s, read_length=1.68e+9, pass_filter=1.25e+6, reads=1.25e+6, Gb=1.68Reads processed: 1300000 reads [02:55, 7487.51 reads/s, read_length=1.74e+9, pass_filter=1.3e+6, reads=1.3e+6, Gb=1.74, perc_pass=100]  2021-01-19 10:36:42,548 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch26.fq using bgzip
Reads processed: 1350000 reads [03:02, 7439.12 reads/s, read_length=1.74e+9, pass_filter=1.3e+6, reads=1.3e+6, Gb=1.74, Reads processed: 1350000 reads [03:02, 7439.12 reads/s, read_length=1.81e+9, pass_filter=1.35e+6, reads=1.35e+6, Gb=1.81, perc_pass=100]2021-01-19 10:36:49,362 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch27.fq using bgzip
Reads processed: 1400000 reads [03:09, 7415.22 reads/s, read_length=1.81e+9, pass_filter=1.35e+6, reads=1.35e+6, Gb=1.81Reads processed: 1400000 reads [03:09, 7415.22 reads/s, read_length=1.88e+9, pass_filter=1.4e+6, reads=1.4e+6, Gb=1.88, perc_pass=100]  2021-01-19 10:36:56,182 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch28.fq using bgzip
Reads processed: 1450000 reads [03:15, 7498.28 reads/s, read_length=1.88e+9, pass_filter=1.4e+6, reads=1.4e+6, Gb=1.88, Reads processed: 1450000 reads [03:15, 7498.28 reads/s, read_length=1.95e+9, pass_filter=1.45e+6, reads=1.45e+6, Gb=1.95, perc_pass=100]2021-01-19 10:37:02,633 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch29.fq using bgzip
Reads processed: 1500000 reads [03:22, 7490.56 reads/s, read_length=1.95e+9, pass_filter=1.45e+6, reads=1.45e+6, Gb=1.95Reads processed: 1500000 reads [03:22, 7490.56 reads/s, read_length=2.01e+9, pass_filter=1.5e+6, reads=1.5e+6, Gb=2.01, perc_pass=100]  2021-01-19 10:37:09,392 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch30.fq using bgzip
Reads processed: 1550000 reads [03:29, 7479.55 reads/s, read_length=2.01e+9, pass_filter=1.5e+6, reads=1.5e+6, Gb=2.01, Reads processed: 1550000 reads [03:29, 7479.55 reads/s, read_length=2.08e+9, pass_filter=1.55e+6, reads=1.55e+6, Gb=2.08, perc_pass=100]2021-01-19 10:37:15,997 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch31.fq using bgzip
Reads processed: 1600000 reads [03:35, 7589.17 reads/s, read_length=2.08e+9, pass_filter=1.55e+6, reads=1.55e+6, Gb=2.08Reads processed: 1600000 reads [03:35, 7589.17 reads/s, read_length=2.14e+9, pass_filter=1.6e+6, reads=1.6e+6, Gb=2.14, perc_pass=100]  2021-01-19 10:37:22,368 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch32.fq using bgzip
Reads processed: 1650000 reads [03:42, 7549.05 reads/s, read_length=2.14e+9, pass_filter=1.6e+6, reads=1.6e+6, Gb=2.14, Reads processed: 1650000 reads [03:42, 7549.05 reads/s, read_length=2.21e+9, pass_filter=1.65e+6, reads=1.65e+6, Gb=2.21, perc_pass=100]2021-01-19 10:37:29,061 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch33.fq using bgzip
Reads processed: 1700000 reads [03:48, 7534.85 reads/s, read_length=2.21e+9, pass_filter=1.65e+6, reads=1.65e+6, Gb=2.21Reads processed: 1700000 reads [03:48, 7534.85 reads/s, read_length=2.28e+9, pass_filter=1.7e+6, reads=1.7e+6, Gb=2.28, perc_pass=100]  2021-01-19 10:37:35,714 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch34.fq using bgzip
Reads processed: 1750000 reads [03:55, 7621.44 reads/s, read_length=2.28e+9, pass_filter=1.7e+6, reads=1.7e+6, Gb=2.28, Reads processed: 1750000 reads [03:55, 7621.44 reads/s, read_length=2.35e+9, pass_filter=1.75e+6, reads=1.75e+6, Gb=2.35, perc_pass=100]2021-01-19 10:37:42,177 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch35.fq using bgzip
Reads processed: 1800000 reads [04:02, 7564.19 reads/s, read_length=2.35e+9, pass_filter=1.75e+6, reads=1.75e+6, Gb=2.35Reads processed: 1800000 reads [04:02, 7564.19 reads/s, read_length=2.41e+9, pass_filter=1.8e+6, reads=1.8e+6, Gb=2.41, perc_pass=100]  2021-01-19 10:37:48,813 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch36.fq using bgzip
Reads processed: 1850000 reads [04:08, 7563.47 reads/s, read_length=2.41e+9, pass_filter=1.8e+6, reads=1.8e+6, Gb=2.41, Reads processed: 1850000 reads [04:08, 7563.47 reads/s, read_length=2.48e+9, pass_filter=1.85e+6, reads=1.85e+6, Gb=2.48, perc_pass=100]2021-01-19 10:37:55,435 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch37.fq using bgzip
Reads processed: 1900000 reads [04:15, 7617.58 reads/s, read_length=2.48e+9, pass_filter=1.85e+6, reads=1.85e+6, Gb=2.48Reads processed: 1900000 reads [04:15, 7617.58 reads/s, read_length=2.55e+9, pass_filter=1.9e+6, reads=1.9e+6, Gb=2.55, perc_pass=100]  2021-01-19 10:38:01,899 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch38.fq using bgzip
Reads processed: 1950000 reads [04:21, 7561.26 reads/s, read_length=2.55e+9, pass_filter=1.9e+6, reads=1.9e+6, Gb=2.55, Reads processed: 1950000 reads [04:21, 7561.26 reads/s, read_length=2.61e+9, pass_filter=1.95e+6, reads=1.95e+6, Gb=2.61, perc_pass=100]2021-01-19 10:38:08,797 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch39.fq using bgzip
Reads processed: 2000000 reads [04:28, 7470.50 reads/s, read_length=2.61e+9, pass_filter=1.95e+6, reads=1.95e+6, Gb=2.61Reads processed: 2000000 reads [04:28, 7470.50 reads/s, read_length=2.68e+9, pass_filter=2e+6, reads=2e+6, Gb=2.68, perc_pass=100]      2021-01-19 10:38:15,532 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch40.fq using bgzip
Reads processed: 2050000 reads [04:35, 7522.72 reads/s, read_length=2.68e+9, pass_filter=2e+6, reads=2e+6, Gb=2.68, percReads processed: 2050000 reads [04:35, 7522.72 reads/s, read_length=2.75e+9, pass_filter=2.05e+6, reads=2.05e+6, Gb=2.75, perc_pass=100]2021-01-19 10:38:22,085 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch41.fq using bgzip
Reads processed: 2100000 reads [04:42, 7440.08 reads/s, read_length=2.75e+9, pass_filter=2.05e+6, reads=2.05e+6, Gb=2.75Reads processed: 2100000 reads [04:42, 7440.08 reads/s, read_length=2.82e+9, pass_filter=2.1e+6, reads=2.1e+6, Gb=2.82, perc_pass=100]  2021-01-19 10:38:28,937 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch42.fq using bgzip
Reads processed: 2150000 reads [04:48, 7454.31 reads/s, read_length=2.82e+9, pass_filter=2.1e+6, reads=2.1e+6, Gb=2.82, Reads processed: 2150000 reads [04:48, 7454.31 reads/s, read_length=2.88e+9, pass_filter=2.15e+6, reads=2.15e+6, Gb=2.88, perc_pass=100]2021-01-19 10:38:35,623 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch43.fq using bgzip
Reads processed: 2200000 reads [04:55, 7528.53 reads/s, read_length=2.88e+9, pass_filter=2.15e+6, reads=2.15e+6, Gb=2.88Reads processed: 2200000 reads [04:55, 7528.53 reads/s, read_length=2.95e+9, pass_filter=2.2e+6, reads=2.2e+6, Gb=2.95, perc_pass=100]  2021-01-19 10:38:42,160 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch44.fq using bgzip
Reads processed: 2250000 reads [05:02, 7439.23 reads/s, read_length=2.95e+9, pass_filter=2.2e+6, reads=2.2e+6, Gb=2.95, Reads processed: 2250000 reads [05:02, 7439.23 reads/s, read_length=3.02e+9, pass_filter=2.25e+6, reads=2.25e+6, Gb=3.02, perc_pass=100]2021-01-19 10:38:49,113 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch45.fq using bgzip
Reads processed: 2300000 reads [05:09, 7405.22 reads/s, read_length=3.02e+9, pass_filter=2.25e+6, reads=2.25e+6, Gb=3.02Reads processed: 2300000 reads [05:09, 7405.22 reads/s, read_length=3.09e+9, pass_filter=2.3e+6, reads=2.3e+6, Gb=3.09, perc_pass=100]  2021-01-19 10:38:55,843 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch46.fq using bgzip
Reads processed: 2350000 reads [05:15, 7501.84 reads/s, read_length=3.09e+9, pass_filter=2.3e+6, reads=2.3e+6, Gb=3.09, Reads processed: 2350000 reads [05:15, 7501.84 reads/s, read_length=3.15e+9, pass_filter=2.35e+6, reads=2.35e+6, Gb=3.15, perc_pass=100]2021-01-19 10:39:02,306 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch47.fq using bgzip
Reads processed: 2400000 reads [05:22, 7446.26 reads/s, read_length=3.15e+9, pass_filter=2.35e+6, reads=2.35e+6, Gb=3.15Reads processed: 2400000 reads [05:22, 7446.26 reads/s, read_length=3.22e+9, pass_filter=2.4e+6, reads=2.4e+6, Gb=3.22, perc_pass=100]  2021-01-19 10:39:09,113 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch48.fq using bgzip
Reads processed: 2450000 reads [05:29, 7387.93 reads/s, read_length=3.22e+9, pass_filter=2.4e+6, reads=2.4e+6, Gb=3.22, Reads processed: 2450000 reads [05:29, 7387.93 reads/s, read_length=3.29e+9, pass_filter=2.45e+6, reads=2.45e+6, Gb=3.29, perc_pass=100]2021-01-19 10:39:16,025 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch49.fq using bgzip
Reads processed: 2500000 reads [05:35, 7498.87 reads/s, read_length=3.29e+9, pass_filter=2.45e+6, reads=2.45e+6, Gb=3.29Reads processed: 2500000 reads [05:35, 7498.87 reads/s, read_length=3.35e+9, pass_filter=2.5e+6, reads=2.5e+6, Gb=3.35, perc_pass=100]  2021-01-19 10:39:22,397 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch50.fq using bgzip
Reads processed: 2550000 reads [05:42, 7492.45 reads/s, read_length=3.35e+9, pass_filter=2.5e+6, reads=2.5e+6, Gb=3.35, Reads processed: 2550000 reads [05:42, 7492.45 reads/s, read_length=3.42e+9, pass_filter=2.55e+6, reads=2.55e+6, Gb=3.42, perc_pass=100]2021-01-19 10:39:29,097 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch51.fq using bgzip
Reads processed: 2600000 reads [05:49, 7493.49 reads/s, read_length=3.42e+9, pass_filter=2.55e+6, reads=2.55e+6, Gb=3.42Reads processed: 2600000 reads [05:49, 7493.49 reads/s, read_length=3.48e+9, pass_filter=2.6e+6, reads=2.6e+6, Gb=3.48, perc_pass=100]  2021-01-19 10:39:35,778 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch52.fq using bgzip
Reads processed: 2650000 reads [05:55, 7608.03 reads/s, read_length=3.48e+9, pass_filter=2.6e+6, reads=2.6e+6, Gb=3.48, Reads processed: 2650000 reads [05:55, 7608.03 reads/s, read_length=3.55e+9, pass_filter=2.65e+6, reads=2.65e+6, Gb=3.55, perc_pass=100]2021-01-19 10:39:42,150 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch53.fq using bgzip
Reads processed: 2700000 reads [06:02, 7519.81 reads/s, read_length=3.55e+9, pass_filter=2.65e+6, reads=2.65e+6, Gb=3.55Reads processed: 2700000 reads [06:02, 7519.81 reads/s, read_length=3.62e+9, pass_filter=2.7e+6, reads=2.7e+6, Gb=3.62, perc_pass=100]  2021-01-19 10:39:48,968 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch54.fq using bgzip
Reads processed: 2750000 reads [06:09, 7459.92 reads/s, read_length=3.62e+9, pass_filter=2.7e+6, reads=2.7e+6, Gb=3.62, Reads processed: 2750000 reads [06:09, 7459.92 reads/s, read_length=3.69e+9, pass_filter=2.75e+6, reads=2.75e+6, Gb=3.69, perc_pass=100]2021-01-19 10:39:55,901 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch55.fq using bgzip
Reads processed: 2800000 reads [06:15, 7490.87 reads/s, read_length=3.69e+9, pass_filter=2.75e+6, reads=2.75e+6, Gb=3.69Reads processed: 2800000 reads [06:15, 7490.87 reads/s, read_length=3.75e+9, pass_filter=2.8e+6, reads=2.8e+6, Gb=3.75, perc_pass=100]  2021-01-19 10:40:02,384 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch56.fq using bgzip
Reads processed: 2850000 reads [06:22, 7450.51 reads/s, read_length=3.75e+9, pass_filter=2.8e+6, reads=2.8e+6, Gb=3.75, Reads processed: 2850000 reads [06:22, 7450.51 reads/s, read_length=3.82e+9, pass_filter=2.85e+6, reads=2.85e+6, Gb=3.82, perc_pass=100]2021-01-19 10:40:09,152 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch57.fq using bgzip
Reads processed: 2900000 reads [06:29, 7433.73 reads/s, read_length=3.82e+9, pass_filter=2.85e+6, reads=2.85e+6, Gb=3.82Reads processed: 2900000 reads [06:29, 7433.73 reads/s, read_length=3.89e+9, pass_filter=2.9e+6, reads=2.9e+6, Gb=3.89, perc_pass=100]  2021-01-19 10:40:15,956 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch58.fq using bgzip
Reads processed: 2950000 reads [06:35, 7532.69 reads/s, read_length=3.89e+9, pass_filter=2.9e+6, reads=2.9e+6, Gb=3.89, Reads processed: 2950000 reads [06:35, 7532.69 reads/s, read_length=3.95e+9, pass_filter=2.95e+6, reads=2.95e+6, Gb=3.95, perc_pass=100]2021-01-19 10:40:22,421 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch59.fq using bgzip
Reads processed: 3000000 reads [06:42, 7479.16 reads/s, read_length=3.95e+9, pass_filter=2.95e+6, reads=2.95e+6, Gb=3.95Reads processed: 3000000 reads [06:42, 7479.16 reads/s, read_length=4.02e+9, pass_filter=3e+6, reads=3e+6, Gb=4.02, perc_pass=100]      2021-01-19 10:40:29,160 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch60.fq using bgzip
Reads processed: 3050000 reads [06:49, 7460.09 reads/s, read_length=4.02e+9, pass_filter=3e+6, reads=3e+6, Gb=4.02, percReads processed: 3050000 reads [06:49, 7460.09 reads/s, read_length=4.09e+9, pass_filter=3.05e+6, reads=3.05e+6, Gb=4.09, perc_pass=100]2021-01-19 10:40:35,907 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch61.fq using bgzip
Reads processed: 3100000 reads [06:55, 7548.31 reads/s, read_length=4.09e+9, pass_filter=3.05e+6, reads=3.05e+6, Gb=4.09Reads processed: 3100000 reads [06:55, 7548.31 reads/s, read_length=4.15e+9, pass_filter=3.1e+6, reads=3.1e+6, Gb=4.15, perc_pass=100]  2021-01-19 10:40:42,359 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch62.fq using bgzip
Reads processed: 3150000 reads [07:02, 7479.63 reads/s, read_length=4.15e+9, pass_filter=3.1e+6, reads=3.1e+6, Gb=4.15, Reads processed: 3150000 reads [07:02, 7479.63 reads/s, read_length=4.22e+9, pass_filter=3.15e+6, reads=3.15e+6, Gb=4.22, perc_pass=100]2021-01-19 10:40:49,190 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch63.fq using bgzip
Reads processed: 3200000 reads [07:09, 7403.65 reads/s, read_length=4.22e+9, pass_filter=3.15e+6, reads=3.15e+6, Gb=4.22Reads processed: 3200000 reads [07:09, 7403.65 reads/s, read_length=4.29e+9, pass_filter=3.2e+6, reads=3.2e+6, Gb=4.29, perc_pass=100]  2021-01-19 10:40:56,136 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch64.fq using bgzip
Reads processed: 3250000 reads [07:15, 7477.21 reads/s, read_length=4.29e+9, pass_filter=3.2e+6, reads=3.2e+6, Gb=4.29, Reads processed: 3250000 reads [07:15, 7477.21 reads/s, read_length=4.36e+9, pass_filter=3.25e+6, reads=3.25e+6, Gb=4.36, perc_pass=100]2021-01-19 10:41:02,642 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch65.fq using bgzip
Reads processed: 3300000 reads [07:22, 7424.72 reads/s, read_length=4.36e+9, pass_filter=3.25e+6, reads=3.25e+6, Gb=4.36Reads processed: 3300000 reads [07:22, 7424.72 reads/s, read_length=4.42e+9, pass_filter=3.3e+6, reads=3.3e+6, Gb=4.42, perc_pass=100]  2021-01-19 10:41:09,459 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch66.fq using bgzip
Reads processed: 3350000 reads [07:29, 7384.69 reads/s, read_length=4.42e+9, pass_filter=3.3e+6, reads=3.3e+6, Gb=4.42, Reads processed: 3350000 reads [07:29, 7384.69 reads/s, read_length=4.49e+9, pass_filter=3.35e+6, reads=3.35e+6, Gb=4.49, perc_pass=100]2021-01-19 10:41:16,316 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch67.fq using bgzip
Reads processed: 3400000 reads [07:35, 7501.99 reads/s, read_length=4.49e+9, pass_filter=3.35e+6, reads=3.35e+6, Gb=4.49Reads processed: 3400000 reads [07:35, 7501.99 reads/s, read_length=4.56e+9, pass_filter=3.4e+6, reads=3.4e+6, Gb=4.56, perc_pass=100]  2021-01-19 10:41:22,767 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch68.fq using bgzip
Reads processed: 3450000 reads [07:42, 7473.22 reads/s, read_length=4.56e+9, pass_filter=3.4e+6, reads=3.4e+6, Gb=4.56, Reads processed: 3450000 reads [07:42, 7473.22 reads/s, read_length=4.62e+9, pass_filter=3.45e+6, reads=3.45e+6, Gb=4.62, perc_pass=100]2021-01-19 10:41:29,479 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch69.fq using bgzip
Reads processed: 3500000 reads [07:49, 7428.49 reads/s, read_length=4.62e+9, pass_filter=3.45e+6, reads=3.45e+6, Gb=4.62Reads processed: 3500000 reads [07:49, 7428.49 reads/s, read_length=4.69e+9, pass_filter=3.5e+6, reads=3.5e+6, Gb=4.69, perc_pass=100]  2021-01-19 10:41:36,345 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch70.fq using bgzip
Reads processed: 3550000 reads [07:55, 7540.57 reads/s, read_length=4.69e+9, pass_filter=3.5e+6, reads=3.5e+6, Gb=4.69, Reads processed: 3550000 reads [07:55, 7540.57 reads/s, read_length=4.76e+9, pass_filter=3.55e+6, reads=3.55e+6, Gb=4.76, perc_pass=100]2021-01-19 10:41:42,673 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch71.fq using bgzip
Reads processed: 3600000 reads [08:02, 7537.74 reads/s, read_length=4.76e+9, pass_filter=3.55e+6, reads=3.55e+6, Gb=4.76Reads processed: 3600000 reads [08:02, 7537.74 reads/s, read_length=4.82e+9, pass_filter=3.6e+6, reads=3.6e+6, Gb=4.82, perc_pass=100]  2021-01-19 10:41:49,389 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch72.fq using bgzip
Reads processed: 3650000 reads [08:09, 7469.73 reads/s, read_length=4.82e+9, pass_filter=3.6e+6, reads=3.6e+6, Gb=4.82, Reads processed: 3650000 reads [08:09, 7469.73 reads/s, read_length=4.89e+9, pass_filter=3.65e+6, reads=3.65e+6, Gb=4.89, perc_pass=100]2021-01-19 10:41:56,234 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch73.fq using bgzip
Reads processed: 3700000 reads [08:15, 7546.78 reads/s, read_length=4.89e+9, pass_filter=3.65e+6, reads=3.65e+6, Gb=4.89Reads processed: 3700000 reads [08:15, 7546.78 reads/s, read_length=4.96e+9, pass_filter=3.7e+6, reads=3.7e+6, Gb=4.96, perc_pass=100]  2021-01-19 10:42:02,622 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch74.fq using bgzip
Reads processed: 3750000 reads [08:22, 7516.49 reads/s, read_length=4.96e+9, pass_filter=3.7e+6, reads=3.7e+6, Gb=4.96, Reads processed: 3750000 reads [08:22, 7516.49 reads/s, read_length=5.03e+9, pass_filter=3.75e+6, reads=3.75e+6, Gb=5.03, perc_pass=100]2021-01-19 10:42:09,349 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch75.fq using bgzip
Reads processed: 3800000 reads [08:29, 7476.78 reads/s, read_length=5.03e+9, pass_filter=3.75e+6, reads=3.75e+6, Gb=5.03Reads processed: 3800000 reads [08:29, 7476.78 reads/s, read_length=5.09e+9, pass_filter=3.8e+6, reads=3.8e+6, Gb=5.09, perc_pass=100]  2021-01-19 10:42:16,117 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch76.fq using bgzip
Reads processed: 3850000 reads [08:35, 7574.05 reads/s, read_length=5.09e+9, pass_filter=3.8e+6, reads=3.8e+6, Gb=5.09, Reads processed: 3850000 reads [08:35, 7574.05 reads/s, read_length=5.16e+9, pass_filter=3.85e+6, reads=3.85e+6, Gb=5.16, perc_pass=100]2021-01-19 10:42:22,523 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch77.fq using bgzip
Reads processed: 3900000 reads [08:42, 7525.94 reads/s, read_length=5.16e+9, pass_filter=3.85e+6, reads=3.85e+6, Gb=5.16Reads processed: 3900000 reads [08:42, 7525.94 reads/s, read_length=5.23e+9, pass_filter=3.9e+6, reads=3.9e+6, Gb=5.23, perc_pass=100]  2021-01-19 10:42:29,263 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch78.fq using bgzip
Reads processed: 3950000 reads [08:49, 7455.69 reads/s, read_length=5.23e+9, pass_filter=3.9e+6, reads=3.9e+6, Gb=5.23, Reads processed: 3950000 reads [08:49, 7455.69 reads/s, read_length=5.29e+9, pass_filter=3.95e+6, reads=3.95e+6, Gb=5.29, perc_pass=100]2021-01-19 10:42:36,129 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch79.fq using bgzip
Reads processed: 4000000 reads [08:55, 7548.54 reads/s, read_length=5.29e+9, pass_filter=3.95e+6, reads=3.95e+6, Gb=5.29Reads processed: 4000000 reads [08:55, 7548.54 reads/s, read_length=5.36e+9, pass_filter=4e+6, reads=4e+6, Gb=5.36, perc_pass=100]      2021-01-19 10:42:42,630 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch80.fq using bgzip
Reads processed: 4050000 reads [09:02, 7471.25 reads/s, read_length=5.36e+9, pass_filter=4e+6, reads=4e+6, Gb=5.36, percReads processed: 4050000 reads [09:02, 7471.25 reads/s, read_length=5.43e+9, pass_filter=4.05e+6, reads=4.05e+6, Gb=5.43, perc_pass=100]2021-01-19 10:42:49,422 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch81.fq using bgzip
Reads processed: 4100000 reads [09:09, 7403.38 reads/s, read_length=5.43e+9, pass_filter=4.05e+6, reads=4.05e+6, Gb=5.43Reads processed: 4100000 reads [09:09, 7403.38 reads/s, read_length=5.5e+9, pass_filter=4.1e+6, reads=4.1e+6, Gb=5.5, perc_pass=100]    2021-01-19 10:42:56,294 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch82.fq using bgzip
Reads processed: 4150000 reads [09:16, 7498.94 reads/s, read_length=5.5e+9, pass_filter=4.1e+6, reads=4.1e+6, Gb=5.5, peReads processed: 4150000 reads [09:16, 7498.94 reads/s, read_length=5.56e+9, pass_filter=4.15e+6, reads=4.15e+6, Gb=5.56, perc_pass=100]2021-01-19 10:43:02,760 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch83.fq using bgzip
Reads processed: 4200000 reads [09:22, 7484.72 reads/s, read_length=5.56e+9, pass_filter=4.15e+6, reads=4.15e+6, Gb=5.56Reads processed: 4200000 reads [09:22, 7484.72 reads/s, read_length=5.63e+9, pass_filter=4.2e+6, reads=4.2e+6, Gb=5.63, perc_pass=100]  2021-01-19 10:43:09,509 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch84.fq using bgzip
Reads processed: 4250000 reads [09:29, 7400.05 reads/s, read_length=5.63e+9, pass_filter=4.2e+6, reads=4.2e+6, Gb=5.63, Reads processed: 4250000 reads [09:29, 7400.05 reads/s, read_length=5.7e+9, pass_filter=4.25e+6, reads=4.25e+6, Gb=5.7, perc_pass=100]2021-01-19 10:43:16,429 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch85.fq using bgzip
Reads processed: 4300000 reads [09:36, 7504.50 reads/s, read_length=5.7e+9, pass_filter=4.25e+6, reads=4.25e+6, Gb=5.7, Reads processed: 4300000 reads [09:36, 7504.50 reads/s, read_length=5.76e+9, pass_filter=4.3e+6, reads=4.3e+6, Gb=5.76, perc_pass=100]2021-01-19 10:43:22,871 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch86.fq using bgzip
Reads processed: 4350000 reads [09:42, 7448.76 reads/s, read_length=5.76e+9, pass_filter=4.3e+6, reads=4.3e+6, Gb=5.76, Reads processed: 4350000 reads [09:42, 7448.76 reads/s, read_length=5.83e+9, pass_filter=4.35e+6, reads=4.35e+6, Gb=5.83, perc_pass=100]2021-01-19 10:43:29,718 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch87.fq using bgzip
Reads processed: 4400000 reads [09:49, 7398.68 reads/s, read_length=5.83e+9, pass_filter=4.35e+6, reads=4.35e+6, Gb=5.83Reads processed: 4400000 reads [09:49, 7398.68 reads/s, read_length=5.9e+9, pass_filter=4.4e+6, reads=4.4e+6, Gb=5.9, perc_pass=100]    2021-01-19 10:43:36,575 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch88.fq using bgzip
Reads processed: 4450000 reads [09:56, 7485.18 reads/s, read_length=5.9e+9, pass_filter=4.4e+6, reads=4.4e+6, Gb=5.9, peReads processed: 4450000 reads [09:56, 7485.18 reads/s, read_length=5.96e+9, pass_filter=4.45e+6, reads=4.45e+6, Gb=5.96, perc_pass=100]2021-01-19 10:43:43,044 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch89.fq using bgzip
Reads processed: 4500000 reads [10:03, 7446.26 reads/s, read_length=5.96e+9, pass_filter=4.45e+6, reads=4.45e+6, Gb=5.96Reads processed: 4500000 reads [10:03, 7446.26 reads/s, read_length=6.03e+9, pass_filter=4.5e+6, reads=4.5e+6, Gb=6.03, perc_pass=100]  2021-01-19 10:43:49,859 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch90.fq using bgzip
Reads processed: 4550000 reads [10:10, 7381.07 reads/s, read_length=6.03e+9, pass_filter=4.5e+6, reads=4.5e+6, Gb=6.03, Reads processed: 4550000 reads [10:10, 7381.07 reads/s, read_length=6.1e+9, pass_filter=4.55e+6, reads=4.55e+6, Gb=6.1, perc_pass=100]2021-01-19 10:43:56,809 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch91.fq using bgzip
Reads processed: 4600000 reads [10:16, 7485.35 reads/s, read_length=6.1e+9, pass_filter=4.55e+6, reads=4.55e+6, Gb=6.1, Reads processed: 4600000 reads [10:16, 7485.35 reads/s, read_length=6.16e+9, pass_filter=4.6e+6, reads=4.6e+6, Gb=6.16, perc_pass=100]2021-01-19 10:44:03,206 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch92.fq using bgzip
Reads processed: 4650000 reads [10:23, 7472.50 reads/s, read_length=6.16e+9, pass_filter=4.6e+6, reads=4.6e+6, Gb=6.16, Reads processed: 4650000 reads [10:23, 7472.50 reads/s, read_length=6.23e+9, pass_filter=4.65e+6, reads=4.65e+6, Gb=6.23, perc_pass=100]2021-01-19 10:44:09,986 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch93.fq using bgzip
Reads processed: 4700000 reads [10:30, 7402.57 reads/s, read_length=6.23e+9, pass_filter=4.65e+6, reads=4.65e+6, Gb=6.23Reads processed: 4700000 reads [10:30, 7402.57 reads/s, read_length=6.3e+9, pass_filter=4.7e+6, reads=4.7e+6, Gb=6.3, perc_pass=100]    2021-01-19 10:44:16,862 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch94.fq using bgzip
Reads processed: 4750000 reads [10:36, 7475.43 reads/s, read_length=6.3e+9, pass_filter=4.7e+6, reads=4.7e+6, Gb=6.3, peReads processed: 4750000 reads [10:36, 7475.43 reads/s, read_length=6.37e+9, pass_filter=4.75e+6, reads=4.75e+6, Gb=6.37, perc_pass=100]2021-01-19 10:44:23,351 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch95.fq using bgzip
Reads processed: 4800000 reads [10:43, 7439.22 reads/s, read_length=6.37e+9, pass_filter=4.75e+6, reads=4.75e+6, Gb=6.37Reads processed: 4800000 reads [10:43, 7439.22 reads/s, read_length=6.43e+9, pass_filter=4.8e+6, reads=4.8e+6, Gb=6.43, perc_pass=100]  2021-01-19 10:44:30,209 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch96.fq using bgzip
Reads processed: 4850000 reads [10:50, 7335.22 reads/s, read_length=6.43e+9, pass_filter=4.8e+6, reads=4.8e+6, Gb=6.43, Reads processed: 4850000 reads [10:50, 7335.22 reads/s, read_length=6.5e+9, pass_filter=4.85e+6, reads=4.85e+6, Gb=6.5, perc_pass=100]2021-01-19 10:44:37,227 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch97.fq using bgzip
Reads processed: 4900000 reads [10:56, 7467.50 reads/s, read_length=6.5e+9, pass_filter=4.85e+6, reads=4.85e+6, Gb=6.5, Reads processed: 4900000 reads [10:56, 7467.50 reads/s, read_length=6.57e+9, pass_filter=4.9e+6, reads=4.9e+6, Gb=6.57, perc_pass=100]2021-01-19 10:44:43,607 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch98.fq using bgzip
Reads processed: 4950000 reads [11:03, 7434.84 reads/s, read_length=6.57e+9, pass_filter=4.9e+6, reads=4.9e+6, Gb=6.57, Reads processed: 4950000 reads [11:03, 7434.84 reads/s, read_length=6.63e+9, pass_filter=4.95e+6, reads=4.95e+6, Gb=6.63, perc_pass=100]2021-01-19 10:44:50,550 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch99.fq using bgzip
Reads processed: 5000000 reads [11:10, 7325.40 reads/s, read_length=6.63e+9, pass_filter=4.95e+6, reads=4.95e+6, Gb=6.63Reads processed: 5000000 reads [11:10, 7325.40 reads/s, read_length=6.7e+9, pass_filter=5e+6, reads=5e+6, Gb=6.7, perc_pass=100]        2021-01-19 10:44:57,507 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch100.fq using bgzip
Reads processed: 5050000 reads [11:17, 7417.88 reads/s, read_length=6.7e+9, pass_filter=5e+6, reads=5e+6, Gb=6.7, perc_pReads processed: 5050000 reads [11:17, 7417.88 reads/s, read_length=6.77e+9, pass_filter=5.05e+6, reads=5.05e+6, Gb=6.77, perc_pass=100]2021-01-19 10:45:04,078 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch101.fq using bgzip
Reads processed: 5100000 reads [11:24, 7368.53 reads/s, read_length=6.77e+9, pass_filter=5.05e+6, reads=5.05e+6, Gb=6.77Reads processed: 5100000 reads [11:24, 7368.53 reads/s, read_length=6.83e+9, pass_filter=5.1e+6, reads=5.1e+6, Gb=6.83, perc_pass=100]  2021-01-19 10:45:10,941 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch102.fq using bgzip
Reads processed: 5150000 reads [11:30, 7370.50 reads/s, read_length=6.83e+9, pass_filter=5.1e+6, reads=5.1e+6, Gb=6.83, Reads processed: 5150000 reads [11:30, 7370.50 reads/s, read_length=6.9e+9, pass_filter=5.15e+6, reads=5.15e+6, Gb=6.9, perc_pass=100]2021-01-19 10:45:17,715 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch103.fq using bgzip
Reads processed: 5200000 reads [11:37, 7479.41 reads/s, read_length=6.9e+9, pass_filter=5.15e+6, reads=5.15e+6, Gb=6.9, Reads processed: 5200000 reads [11:37, 7479.41 reads/s, read_length=6.97e+9, pass_filter=5.2e+6, reads=5.2e+6, Gb=6.97, perc_pass=100]2021-01-19 10:45:24,160 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch104.fq using bgzip
Reads processed: 5250000 reads [11:44, 7450.58 reads/s, read_length=6.97e+9, pass_filter=5.2e+6, reads=5.2e+6, Gb=6.97, Reads processed: 5250000 reads [11:44, 7450.58 reads/s, read_length=7.03e+9, pass_filter=5.25e+6, reads=5.25e+6, Gb=7.03, perc_pass=100]2021-01-19 10:45:30,974 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch105.fq using bgzip
Reads processed: 5300000 reads [11:51, 7388.15 reads/s, read_length=7.03e+9, pass_filter=5.25e+6, reads=5.25e+6, Gb=7.03Reads processed: 5300000 reads [11:51, 7388.15 reads/s, read_length=7.1e+9, pass_filter=5.3e+6, reads=5.3e+6, Gb=7.1, perc_pass=100]    2021-01-19 10:45:37,850 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch106.fq using bgzip
Reads processed: 5350000 reads [11:57, 7496.55 reads/s, read_length=7.1e+9, pass_filter=5.3e+6, reads=5.3e+6, Gb=7.1, peReads processed: 5350000 reads [11:57, 7496.55 reads/s, read_length=7.17e+9, pass_filter=5.35e+6, reads=5.35e+6, Gb=7.17, perc_pass=100]2021-01-19 10:45:44,364 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch107.fq using bgzip
Reads processed: 5400000 reads [12:04, 7466.96 reads/s, read_length=7.17e+9, pass_filter=5.35e+6, reads=5.35e+6, Gb=7.17Reads processed: 5400000 reads [12:04, 7466.96 reads/s, read_length=7.23e+9, pass_filter=5.4e+6, reads=5.4e+6, Gb=7.23, perc_pass=100]  2021-01-19 10:45:51,075 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch108.fq using bgzip
Reads processed: 5450000 reads [12:10, 7453.78 reads/s, read_length=7.23e+9, pass_filter=5.4e+6, reads=5.4e+6, Gb=7.23, Reads processed: 5450000 reads [12:10, 7453.78 reads/s, read_length=7.3e+9, pass_filter=5.45e+6, reads=5.45e+6, Gb=7.3, perc_pass=100]2021-01-19 10:45:57,724 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch109.fq using bgzip
Reads processed: 5500000 reads [12:17, 7555.05 reads/s, read_length=7.3e+9, pass_filter=5.45e+6, reads=5.45e+6, Gb=7.3, Reads processed: 5500000 reads [12:17, 7555.05 reads/s, read_length=7.37e+9, pass_filter=5.5e+6, reads=5.5e+6, Gb=7.37, perc_pass=100]2021-01-19 10:46:04,171 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch110.fq using bgzip
Reads processed: 5550000 reads [12:24, 7525.09 reads/s, read_length=7.37e+9, pass_filter=5.5e+6, reads=5.5e+6, Gb=7.37, Reads processed: 5550000 reads [12:24, 7525.09 reads/s, read_length=7.43e+9, pass_filter=5.55e+6, reads=5.55e+6, Gb=7.43, perc_pass=100]2021-01-19 10:46:10,874 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch111.fq using bgzip
Reads processed: 5600000 reads [12:30, 7516.44 reads/s, read_length=7.43e+9, pass_filter=5.55e+6, reads=5.55e+6, Gb=7.43Reads processed: 5600000 reads [12:30, 7516.44 reads/s, read_length=7.5e+9, pass_filter=5.6e+6, reads=5.6e+6, Gb=7.5, perc_pass=100]    2021-01-19 10:46:17,533 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch112.fq using bgzip
Reads processed: 5650000 reads [12:37, 7582.89 reads/s, read_length=7.5e+9, pass_filter=5.6e+6, reads=5.6e+6, Gb=7.5, peReads processed: 5650000 reads [12:37, 7582.89 reads/s, read_length=7.57e+9, pass_filter=5.65e+6, reads=5.65e+6, Gb=7.57, perc_pass=100]2021-01-19 10:46:24,028 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch113.fq using bgzip
Reads processed: 5700000 reads [12:43, 7532.71 reads/s, read_length=7.57e+9, pass_filter=5.65e+6, reads=5.65e+6, Gb=7.57Reads processed: 5700000 reads [12:43, 7532.71 reads/s, read_length=7.63e+9, pass_filter=5.7e+6, reads=5.7e+6, Gb=7.63, perc_pass=100]  2021-01-19 10:46:30,721 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch114.fq using bgzip
Reads processed: 5750000 reads [12:50, 7519.49 reads/s, read_length=7.63e+9, pass_filter=5.7e+6, reads=5.7e+6, Gb=7.63, Reads processed: 5750000 reads [12:50, 7519.49 reads/s, read_length=7.7e+9, pass_filter=5.75e+6, reads=5.75e+6, Gb=7.7, perc_pass=100]2021-01-19 10:46:37,414 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch115.fq using bgzip
Reads processed: 5800000 reads [12:57, 7600.54 reads/s, read_length=7.7e+9, pass_filter=5.75e+6, reads=5.75e+6, Gb=7.7, Reads processed: 5800000 reads [12:57, 7600.54 reads/s, read_length=7.77e+9, pass_filter=5.8e+6, reads=5.8e+6, Gb=7.77, perc_pass=100]2021-01-19 10:46:43,817 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch116.fq using bgzip
Reads processed: 5850000 reads [13:03, 7541.06 reads/s, read_length=7.77e+9, pass_filter=5.8e+6, reads=5.8e+6, Gb=7.77, Reads processed: 5850000 reads [13:03, 7541.06 reads/s, read_length=7.84e+9, pass_filter=5.85e+6, reads=5.85e+6, Gb=7.84, perc_pass=100]2021-01-19 10:46:50,593 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch117.fq using bgzip
Reads processed: 5900000 reads [13:10, 7520.09 reads/s, read_length=7.84e+9, pass_filter=5.85e+6, reads=5.85e+6, Gb=7.84Reads processed: 5900000 reads [13:10, 7520.09 reads/s, read_length=7.9e+9, pass_filter=5.9e+6, reads=5.9e+6, Gb=7.9, perc_pass=100]    2021-01-19 10:46:57,323 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch118.fq using bgzip
Reads processed: 5950000 reads [13:17, 7569.62 reads/s, read_length=7.9e+9, pass_filter=5.9e+6, reads=5.9e+6, Gb=7.9, peReads processed: 5950000 reads [13:17, 7569.62 reads/s, read_length=7.97e+9, pass_filter=5.95e+6, reads=5.95e+6, Gb=7.97, perc_pass=100]2021-01-19 10:47:03,794 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch119.fq using bgzip
Reads processed: 6000000 reads [13:23, 7503.17 reads/s, read_length=7.97e+9, pass_filter=5.95e+6, reads=5.95e+6, Gb=7.97Reads processed: 6000000 reads [13:23, 7503.17 reads/s, read_length=8.04e+9, pass_filter=6e+6, reads=6e+6, Gb=8.04, perc_pass=100]      2021-01-19 10:47:10,552 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch120.fq using bgzip
Reads processed: 6050000 reads [13:30, 7499.46 reads/s, read_length=8.04e+9, pass_filter=6e+6, reads=6e+6, Gb=8.04, percReads processed: 6050000 reads [13:30, 7499.46 reads/s, read_length=8.1e+9, pass_filter=6.05e+6, reads=6.05e+6, Gb=8.1, perc_pass=100]2021-01-19 10:47:17,266 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch121.fq using bgzip
Reads processed: 6100000 reads [13:36, 7579.04 reads/s, read_length=8.1e+9, pass_filter=6.05e+6, reads=6.05e+6, Gb=8.1, Reads processed: 6100000 reads [13:36, 7579.04 reads/s, read_length=8.17e+9, pass_filter=6.1e+6, reads=6.1e+6, Gb=8.17, perc_pass=100]2021-01-19 10:47:23,681 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch122.fq using bgzip
Reads processed: 6150000 reads [13:43, 7531.51 reads/s, read_length=8.17e+9, pass_filter=6.1e+6, reads=6.1e+6, Gb=8.17, Reads processed: 6150000 reads [13:43, 7531.51 reads/s, read_length=8.24e+9, pass_filter=6.15e+6, reads=6.15e+6, Gb=8.24, perc_pass=100]2021-01-19 10:47:30,420 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch123.fq using bgzip
Reads processed: 6200000 reads [13:50, 7475.74 reads/s, read_length=8.24e+9, pass_filter=6.15e+6, reads=6.15e+6, Gb=8.24Reads processed: 6200000 reads [13:50, 7475.74 reads/s, read_length=8.3e+9, pass_filter=6.2e+6, reads=6.2e+6, Gb=8.3, perc_pass=100]    2021-01-19 10:47:37,265 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch124.fq using bgzip
Reads processed: 6250000 reads [13:56, 7553.69 reads/s, read_length=8.3e+9, pass_filter=6.2e+6, reads=6.2e+6, Gb=8.3, peReads processed: 6250000 reads [13:56, 7553.69 reads/s, read_length=8.37e+9, pass_filter=6.25e+6, reads=6.25e+6, Gb=8.37, perc_pass=100]2021-01-19 10:47:43,678 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch125.fq using bgzip
Reads processed: 6300000 reads [14:03, 7460.84 reads/s, read_length=8.37e+9, pass_filter=6.25e+6, reads=6.25e+6, Gb=8.37Reads processed: 6300000 reads [14:03, 7460.84 reads/s, read_length=8.44e+9, pass_filter=6.3e+6, reads=6.3e+6, Gb=8.44, perc_pass=100]  2021-01-19 10:47:50,613 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch126.fq using bgzip
Reads processed: 6350000 reads [14:10, 7397.26 reads/s, read_length=8.44e+9, pass_filter=6.3e+6, reads=6.3e+6, Gb=8.44, Reads processed: 6350000 reads [14:10, 7397.26 reads/s, read_length=8.51e+9, pass_filter=6.35e+6, reads=6.35e+6, Gb=8.51, perc_pass=100]2021-01-19 10:47:57,482 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch127.fq using bgzip
Reads processed: 6400000 reads [14:17, 7476.50 reads/s, read_length=8.51e+9, pass_filter=6.35e+6, reads=6.35e+6, Gb=8.51Reads processed: 6400000 reads [14:17, 7476.50 reads/s, read_length=8.57e+9, pass_filter=6.4e+6, reads=6.4e+6, Gb=8.57, perc_pass=100]  2021-01-19 10:48:03,978 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch128.fq using bgzip
Reads processed: 6450000 reads [14:24, 7422.65 reads/s, read_length=8.57e+9, pass_filter=6.4e+6, reads=6.4e+6, Gb=8.57, Reads processed: 6450000 reads [14:24, 7422.65 reads/s, read_length=8.64e+9, pass_filter=6.45e+6, reads=6.45e+6, Gb=8.64, perc_pass=100]2021-01-19 10:48:10,864 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch129.fq using bgzip
Reads processed: 6500000 reads [14:30, 7401.26 reads/s, read_length=8.64e+9, pass_filter=6.45e+6, reads=6.45e+6, Gb=8.64Reads processed: 6500000 reads [14:30, 7401.26 reads/s, read_length=8.71e+9, pass_filter=6.5e+6, reads=6.5e+6, Gb=8.71, perc_pass=100]  2021-01-19 10:48:17,635 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch130.fq using bgzip
Reads processed: 6550000 reads [14:37, 7534.31 reads/s, read_length=8.71e+9, pass_filter=6.5e+6, reads=6.5e+6, Gb=8.71, Reads processed: 6550000 reads [14:37, 7534.31 reads/s, read_length=8.78e+9, pass_filter=6.55e+6, reads=6.55e+6, Gb=8.78, perc_pass=100]2021-01-19 10:48:23,967 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch131.fq using bgzip
Reads processed: 6600000 reads [14:44, 7449.21 reads/s, read_length=8.78e+9, pass_filter=6.55e+6, reads=6.55e+6, Gb=8.78Reads processed: 6600000 reads [14:44, 7449.21 reads/s, read_length=8.84e+9, pass_filter=6.6e+6, reads=6.6e+6, Gb=8.84, perc_pass=100]  2021-01-19 10:48:30,920 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch132.fq using bgzip
Reads processed: 6650000 reads [14:51, 7393.83 reads/s, read_length=8.84e+9, pass_filter=6.6e+6, reads=6.6e+6, Gb=8.84, Reads processed: 6650000 reads [14:51, 7393.83 reads/s, read_length=8.91e+9, pass_filter=6.65e+6, reads=6.65e+6, Gb=8.91, perc_pass=100]2021-01-19 10:48:37,836 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch133.fq using bgzip
Reads processed: 6700000 reads [14:57, 7488.86 reads/s, read_length=8.91e+9, pass_filter=6.65e+6, reads=6.65e+6, Gb=8.91Reads processed: 6700000 reads [14:57, 7488.86 reads/s, read_length=8.98e+9, pass_filter=6.7e+6, reads=6.7e+6, Gb=8.98, perc_pass=100]  2021-01-19 10:48:44,212 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch134.fq using bgzip
Reads processed: 6750000 reads [15:04, 7479.80 reads/s, read_length=8.98e+9, pass_filter=6.7e+6, reads=6.7e+6, Gb=8.98, Reads processed: 6750000 reads [15:04, 7479.80 reads/s, read_length=9.04e+9, pass_filter=6.75e+6, reads=6.75e+6, Gb=9.04, perc_pass=100]2021-01-19 10:48:50,955 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch135.fq using bgzip
Reads processed: 6800000 reads [15:10, 7460.36 reads/s, read_length=9.04e+9, pass_filter=6.75e+6, reads=6.75e+6, Gb=9.04Reads processed: 6800000 reads [15:10, 7460.36 reads/s, read_length=9.11e+9, pass_filter=6.8e+6, reads=6.8e+6, Gb=9.11, perc_pass=100]  2021-01-19 10:48:57,705 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch136.fq using bgzip
Reads processed: 6850000 reads [15:17, 7560.27 reads/s, read_length=9.11e+9, pass_filter=6.8e+6, reads=6.8e+6, Gb=9.11, Reads processed: 6850000 reads [15:17, 7560.27 reads/s, read_length=9.18e+9, pass_filter=6.85e+6, reads=6.85e+6, Gb=9.18, perc_pass=100]2021-01-19 10:49:04,078 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch137.fq using bgzip
Reads processed: 6900000 reads [15:24, 7504.52 reads/s, read_length=9.18e+9, pass_filter=6.85e+6, reads=6.85e+6, Gb=9.18Reads processed: 6900000 reads [15:24, 7504.52 reads/s, read_length=9.24e+9, pass_filter=6.9e+6, reads=6.9e+6, Gb=9.24, perc_pass=100]  2021-01-19 10:49:10,890 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch138.fq using bgzip
Reads processed: 6950000 reads [15:30, 7439.82 reads/s, read_length=9.24e+9, pass_filter=6.9e+6, reads=6.9e+6, Gb=9.24, Reads processed: 6950000 reads [15:30, 7439.82 reads/s, read_length=9.31e+9, pass_filter=6.95e+6, reads=6.95e+6, Gb=9.31, perc_pass=100]2021-01-19 10:49:17,733 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch139.fq using bgzip
Reads processed: 7000000 reads [15:37, 7554.01 reads/s, read_length=9.31e+9, pass_filter=6.95e+6, reads=6.95e+6, Gb=9.31Reads processed: 7000000 reads [15:37, 7554.01 reads/s, read_length=9.38e+9, pass_filter=7e+6, reads=7e+6, Gb=9.38, perc_pass=100]      2021-01-19 10:49:24,070 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch140.fq using bgzip
Reads processed: 7050000 reads [15:44, 7490.88 reads/s, read_length=9.38e+9, pass_filter=7e+6, reads=7e+6, Gb=9.38, percReads processed: 7050000 reads [15:44, 7490.88 reads/s, read_length=9.44e+9, pass_filter=7.05e+6, reads=7.05e+6, Gb=9.44, perc_pass=100]2021-01-19 10:49:30,977 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch141.fq using bgzip
Reads processed: 7100000 reads [15:51, 7431.90 reads/s, read_length=9.44e+9, pass_filter=7.05e+6, reads=7.05e+6, Gb=9.44Reads processed: 7100000 reads [15:51, 7431.90 reads/s, read_length=9.51e+9, pass_filter=7.1e+6, reads=7.1e+6, Gb=9.51, perc_pass=100]  2021-01-19 10:49:37,851 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch142.fq using bgzip
Reads processed: 7150000 reads [15:57, 7498.30 reads/s, read_length=9.51e+9, pass_filter=7.1e+6, reads=7.1e+6, Gb=9.51, Reads processed: 7150000 reads [15:57, 7498.30 reads/s, read_length=9.58e+9, pass_filter=7.15e+6, reads=7.15e+6, Gb=9.58, perc_pass=100]2021-01-19 10:49:44,301 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch143.fq using bgzip
Reads processed: 7200000 reads [16:04, 7461.00 reads/s, read_length=9.58e+9, pass_filter=7.15e+6, reads=7.15e+6, Gb=9.58Reads processed: 7200000 reads [16:04, 7461.00 reads/s, read_length=9.65e+9, pass_filter=7.2e+6, reads=7.2e+6, Gb=9.65, perc_pass=100]  2021-01-19 10:49:51,082 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch144.fq using bgzip
Reads processed: 7250000 reads [16:11, 7431.35 reads/s, read_length=9.65e+9, pass_filter=7.2e+6, reads=7.2e+6, Gb=9.65, Reads processed: 7250000 reads [16:11, 7431.35 reads/s, read_length=9.71e+9, pass_filter=7.25e+6, reads=7.25e+6, Gb=9.71, perc_pass=100]2021-01-19 10:49:57,865 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch145.fq using bgzip
Reads processed: 7300000 reads [16:17, 7502.54 reads/s, read_length=9.71e+9, pass_filter=7.25e+6, reads=7.25e+6, Gb=9.71Reads processed: 7300000 reads [16:17, 7502.54 reads/s, read_length=9.78e+9, pass_filter=7.3e+6, reads=7.3e+6, Gb=9.78, perc_pass=100]  2021-01-19 10:50:04,400 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch146.fq using bgzip
Reads processed: 7350000 reads [16:24, 7443.72 reads/s, read_length=9.78e+9, pass_filter=7.3e+6, reads=7.3e+6, Gb=9.78, Reads processed: 7350000 reads [16:24, 7443.72 reads/s, read_length=9.85e+9, pass_filter=7.35e+6, reads=7.35e+6, Gb=9.85, perc_pass=100]2021-01-19 10:50:11,240 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch147.fq using bgzip
Reads processed: 7400000 reads [16:31, 7420.59 reads/s, read_length=9.85e+9, pass_filter=7.35e+6, reads=7.35e+6, Gb=9.85Reads processed: 7400000 reads [16:31, 7420.59 reads/s, read_length=9.91e+9, pass_filter=7.4e+6, reads=7.4e+6, Gb=9.91, perc_pass=100]  2021-01-19 10:50:17,976 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch148.fq using bgzip
Reads processed: 7450000 reads [16:37, 7552.74 reads/s, read_length=9.91e+9, pass_filter=7.4e+6, reads=7.4e+6, Gb=9.91, Reads processed: 7450000 reads [16:37, 7552.74 reads/s, read_length=9.98e+9, pass_filter=7.45e+6, reads=7.45e+6, Gb=9.98, perc_pass=100]2021-01-19 10:50:24,415 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch149.fq using bgzip
Reads processed: 7500000 reads [16:44, 7468.14 reads/s, read_length=9.98e+9, pass_filter=7.45e+6, reads=7.45e+6, Gb=9.98Reads processed: 7500000 reads [16:44, 7468.14 reads/s, read_length=1e+10, pass_filter=7.5e+6, reads=7.5e+6, Gb=10, perc_pass=100]      2021-01-19 10:50:31,239 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch150.fq using bgzip
Reads processed: 7550000 reads [16:51, 7415.64 reads/s, read_length=1e+10, pass_filter=7.5e+6, reads=7.5e+6, Gb=10, percReads processed: 7550000 reads [16:51, 7415.64 reads/s, read_length=1.01e+10, pass_filter=7.55e+6, reads=7.55e+6, Gb=10.1, perc_pass=100]2021-01-19 10:50:38,100 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch151.fq using bgzip
Reads processed: 7600000 reads [16:57, 7497.82 reads/s, read_length=1.01e+10, pass_filter=7.55e+6, reads=7.55e+6, Gb=10.Reads processed: 7600000 reads [16:57, 7497.82 reads/s, read_length=1.02e+10, pass_filter=7.6e+6, reads=7.6e+6, Gb=10.2, perc_pass=100]  2021-01-19 10:50:44,557 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch152.fq using bgzip
Reads processed: 7650000 reads [17:04, 7444.90 reads/s, read_length=1.02e+10, pass_filter=7.6e+6, reads=7.6e+6, Gb=10.2,Reads processed: 7650000 reads [17:04, 7444.90 reads/s, read_length=1.02e+10, pass_filter=7.65e+6, reads=7.65e+6, Gb=10.2, perc_pass=100]2021-01-19 10:50:51,403 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch153.fq using bgzip
Reads processed: 7700000 reads [17:11, 7394.80 reads/s, read_length=1.02e+10, pass_filter=7.65e+6, reads=7.65e+6, Gb=10.Reads processed: 7700000 reads [17:11, 7394.80 reads/s, read_length=1.03e+10, pass_filter=7.7e+6, reads=7.7e+6, Gb=10.3, perc_pass=100]  2021-01-19 10:50:58,321 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch154.fq using bgzip
Reads processed: 7750000 reads [17:18, 7439.38 reads/s, read_length=1.03e+10, pass_filter=7.7e+6, reads=7.7e+6, Gb=10.3,Reads processed: 7750000 reads [17:18, 7439.38 reads/s, read_length=1.04e+10, pass_filter=7.75e+6, reads=7.75e+6, Gb=10.4, perc_pass=100]2021-01-19 10:51:04,904 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch155.fq using bgzip
Reads processed: 7800000 reads [17:25, 7362.21 reads/s, read_length=1.04e+10, pass_filter=7.75e+6, reads=7.75e+6, Gb=10.Reads processed: 7800000 reads [17:25, 7362.21 reads/s, read_length=1.05e+10, pass_filter=7.8e+6, reads=7.8e+6, Gb=10.5, perc_pass=100]  2021-01-19 10:51:11,882 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch156.fq using bgzip
Reads processed: 7850000 reads [17:31, 7348.95 reads/s, read_length=1.05e+10, pass_filter=7.8e+6, reads=7.8e+6, Gb=10.5,Reads processed: 7850000 reads [17:31, 7348.95 reads/s, read_length=1.05e+10, pass_filter=7.85e+6, reads=7.85e+6, Gb=10.5, perc_pass=100]2021-01-19 10:51:18,712 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch157.fq using bgzip
Reads processed: 7900000 reads [17:38, 7451.62 reads/s, read_length=1.05e+10, pass_filter=7.85e+6, reads=7.85e+6, Gb=10.Reads processed: 7900000 reads [17:38, 7451.62 reads/s, read_length=1.06e+10, pass_filter=7.9e+6, reads=7.9e+6, Gb=10.6, perc_pass=100]  2021-01-19 10:51:25,151 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch158.fq using bgzip
Reads processed: 7950000 reads [17:45, 7424.46 reads/s, read_length=1.06e+10, pass_filter=7.9e+6, reads=7.9e+6, Gb=10.6,Reads processed: 7950000 reads [17:45, 7424.46 reads/s, read_length=1.07e+10, pass_filter=7.95e+6, reads=7.95e+6, Gb=10.7, perc_pass=100]2021-01-19 10:51:32,001 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch159.fq using bgzip
Reads processed: 8000000 reads [17:52, 7373.21 reads/s, read_length=1.07e+10, pass_filter=7.95e+6, reads=7.95e+6, Gb=10.Reads processed: 8000000 reads [17:52, 7373.21 reads/s, read_length=1.07e+10, pass_filter=8e+6, reads=8e+6, Gb=10.7, perc_pass=100]      2021-01-19 10:51:38,923 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch160.fq using bgzip
Reads processed: 8050000 reads [17:58, 7433.02 reads/s, read_length=1.07e+10, pass_filter=8e+6, reads=8e+6, Gb=10.7, perReads processed: 8050000 reads [17:58, 7433.02 reads/s, read_length=1.08e+10, pass_filter=8.05e+6, reads=8.05e+6, Gb=10.8, perc_pass=100]2021-01-19 10:51:45,486 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch161.fq using bgzip
Reads processed: 8100000 reads [18:05, 7384.49 reads/s, read_length=1.08e+10, pass_filter=8.05e+6, reads=8.05e+6, Gb=10.Reads processed: 8100000 reads [18:05, 7384.49 reads/s, read_length=1.09e+10, pass_filter=8.1e+6, reads=8.1e+6, Gb=10.9, perc_pass=100]  2021-01-19 10:51:52,323 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch162.fq using bgzip
Reads processed: 8150000 reads [18:12, 7382.26 reads/s, read_length=1.09e+10, pass_filter=8.1e+6, reads=8.1e+6, Gb=10.9,Reads processed: 8150000 reads [18:12, 7382.26 reads/s, read_length=1.09e+10, pass_filter=8.15e+6, reads=8.15e+6, Gb=10.9, perc_pass=100]2021-01-19 10:51:59,142 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch163.fq using bgzip
Reads processed: 8200000 reads [18:18, 7484.42 reads/s, read_length=1.09e+10, pass_filter=8.15e+6, reads=8.15e+6, Gb=10.Reads processed: 8200000 reads [18:18, 7484.42 reads/s, read_length=1.1e+10, pass_filter=8.2e+6, reads=8.2e+6, Gb=11, perc_pass=100]     2021-01-19 10:52:05,571 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch164.fq using bgzip
Reads processed: 8250000 reads [18:25, 7367.93 reads/s, read_length=1.1e+10, pass_filter=8.2e+6, reads=8.2e+6, Gb=11, peReads processed: 8250000 reads [18:25, 7367.93 reads/s, read_length=1.11e+10, pass_filter=8.25e+6, reads=8.25e+6, Gb=11.1, perc_pass=100]2021-01-19 10:52:12,626 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch165.fq using bgzip
Reads processed: 8300000 reads [18:32, 7350.32 reads/s, read_length=1.11e+10, pass_filter=8.25e+6, reads=8.25e+6, Gb=11.Reads processed: 8300000 reads [18:32, 7350.32 reads/s, read_length=1.11e+10, pass_filter=8.3e+6, reads=8.3e+6, Gb=11.1, perc_pass=100]  2021-01-19 10:52:19,487 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch166.fq using bgzip
Reads processed: 8350000 reads [18:39, 7437.56 reads/s, read_length=1.11e+10, pass_filter=8.3e+6, reads=8.3e+6, Gb=11.1,Reads processed: 8350000 reads [18:39, 7437.56 reads/s, read_length=1.12e+10, pass_filter=8.35e+6, reads=8.35e+6, Gb=11.2, perc_pass=100]2021-01-19 10:52:26,055 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch167.fq using bgzip
Reads processed: 8400000 reads [18:46, 7353.26 reads/s, read_length=1.12e+10, pass_filter=8.35e+6, reads=8.35e+6, Gb=11.Reads processed: 8400000 reads [18:46, 7353.26 reads/s, read_length=1.13e+10, pass_filter=8.4e+6, reads=8.4e+6, Gb=11.3, perc_pass=100]  2021-01-19 10:52:32,989 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch168.fq using bgzip
Reads processed: 8450000 reads [18:53, 7333.74 reads/s, read_length=1.13e+10, pass_filter=8.4e+6, reads=8.4e+6, Gb=11.3,Reads processed: 8450000 reads [18:53, 7333.74 reads/s, read_length=1.13e+10, pass_filter=8.45e+6, reads=8.45e+6, Gb=11.3, perc_pass=100]2021-01-19 10:52:39,857 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch169.fq using bgzip
Reads processed: 8500000 reads [18:59, 7425.41 reads/s, read_length=1.13e+10, pass_filter=8.45e+6, reads=8.45e+6, Gb=11.Reads processed: 8500000 reads [18:59, 7425.41 reads/s, read_length=1.14e+10, pass_filter=8.5e+6, reads=8.5e+6, Gb=11.4, perc_pass=100]  2021-01-19 10:52:46,374 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch170.fq using bgzip
Reads processed: 8550000 reads [19:06, 7392.97 reads/s, read_length=1.14e+10, pass_filter=8.5e+6, reads=8.5e+6, Gb=11.4,Reads processed: 8550000 reads [19:06, 7392.97 reads/s, read_length=1.15e+10, pass_filter=8.55e+6, reads=8.55e+6, Gb=11.5, perc_pass=100]2021-01-19 10:52:53,192 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch171.fq using bgzip
Reads processed: 8600000 reads [19:13, 7385.70 reads/s, read_length=1.15e+10, pass_filter=8.55e+6, reads=8.55e+6, Gb=11.Reads processed: 8600000 reads [19:13, 7385.70 reads/s, read_length=1.15e+10, pass_filter=8.6e+6, reads=8.6e+6, Gb=11.5, perc_pass=100]  2021-01-19 10:53:00,019 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch172.fq using bgzip
Reads processed: 8650000 reads [19:19, 7428.84 reads/s, read_length=1.15e+10, pass_filter=8.6e+6, reads=8.6e+6, Gb=11.5,Reads processed: 8650000 reads [19:19, 7428.84 reads/s, read_length=1.16e+10, pass_filter=8.65e+6, reads=8.65e+6, Gb=11.6, perc_pass=100]2021-01-19 10:53:06,631 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch173.fq using bgzip
Reads processed: 8700000 reads [19:26, 7403.06 reads/s, read_length=1.16e+10, pass_filter=8.65e+6, reads=8.65e+6, Gb=11.Reads processed: 8700000 reads [19:26, 7403.06 reads/s, read_length=1.17e+10, pass_filter=8.7e+6, reads=8.7e+6, Gb=11.7, perc_pass=100]  2021-01-19 10:53:13,416 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch174.fq using bgzip
Reads processed: 8750000 reads [19:33, 7428.38 reads/s, read_length=1.17e+10, pass_filter=8.7e+6, reads=8.7e+6, Gb=11.7,Reads processed: 8750000 reads [19:33, 7428.38 reads/s, read_length=1.17e+10, pass_filter=8.75e+6, reads=8.75e+6, Gb=11.7, perc_pass=100]2021-01-19 10:53:20,091 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch175.fq using bgzip
Reads processed: 8800000 reads [19:39, 7499.12 reads/s, read_length=1.17e+10, pass_filter=8.75e+6, reads=8.75e+6, Gb=11.Reads processed: 8800000 reads [19:39, 7499.12 reads/s, read_length=1.18e+10, pass_filter=8.8e+6, reads=8.8e+6, Gb=11.8, perc_pass=100]  2021-01-19 10:53:26,670 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch176.fq using bgzip
Reads processed: 8850000 reads [19:46, 7428.08 reads/s, read_length=1.18e+10, pass_filter=8.8e+6, reads=8.8e+6, Gb=11.8,Reads processed: 8850000 reads [19:46, 7428.08 reads/s, read_length=1.19e+10, pass_filter=8.85e+6, reads=8.85e+6, Gb=11.9, perc_pass=100]2021-01-19 10:53:33,492 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch177.fq using bgzip
Reads processed: 8900000 reads [19:53, 7413.58 reads/s, read_length=1.19e+10, pass_filter=8.85e+6, reads=8.85e+6, Gb=11.Reads processed: 8900000 reads [19:53, 7413.58 reads/s, read_length=1.19e+10, pass_filter=8.9e+6, reads=8.9e+6, Gb=11.9, perc_pass=100]  2021-01-19 10:53:40,318 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch178.fq using bgzip
Reads processed: 8950000 reads [20:00, 7488.77 reads/s, read_length=1.19e+10, pass_filter=8.9e+6, reads=8.9e+6, Gb=11.9,Reads processed: 8950000 reads [20:00, 7488.77 reads/s, read_length=1.2e+10, pass_filter=8.95e+6, reads=8.95e+6, Gb=12, perc_pass=100] 2021-01-19 10:53:46,808 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch179.fq using bgzip
Reads processed: 9000000 reads [20:06, 7449.59 reads/s, read_length=1.2e+10, pass_filter=8.95e+6, reads=8.95e+6, Gb=12, Reads processed: 9000000 reads [20:06, 7449.59 reads/s, read_length=1.21e+10, pass_filter=9e+6, reads=9e+6, Gb=12.1, perc_pass=100]   2021-01-19 10:53:53,589 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch180.fq using bgzip
Reads processed: 9050000 reads [20:13, 7428.46 reads/s, read_length=1.21e+10, pass_filter=9e+6, reads=9e+6, Gb=12.1, perReads processed: 9050000 reads [20:13, 7428.46 reads/s, read_length=1.21e+10, pass_filter=9.05e+6, reads=9.05e+6, Gb=12.1, perc_pass=100]2021-01-19 10:54:00,354 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch181.fq using bgzip
Reads processed: 9100000 reads [20:20, 7518.30 reads/s, read_length=1.21e+10, pass_filter=9.05e+6, reads=9.05e+6, Gb=12.Reads processed: 9100000 reads [20:20, 7518.30 reads/s, read_length=1.22e+10, pass_filter=9.1e+6, reads=9.1e+6, Gb=12.2, perc_pass=100]  2021-01-19 10:54:06,838 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch182.fq using bgzip
Reads processed: 9150000 reads [20:26, 7474.81 reads/s, read_length=1.22e+10, pass_filter=9.1e+6, reads=9.1e+6, Gb=12.2,Reads processed: 9150000 reads [20:26, 7474.81 reads/s, read_length=1.23e+10, pass_filter=9.15e+6, reads=9.15e+6, Gb=12.3, perc_pass=100]2021-01-19 10:54:13,589 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch183.fq using bgzip
Reads processed: 9200000 reads [20:33, 7408.01 reads/s, read_length=1.23e+10, pass_filter=9.15e+6, reads=9.15e+6, Gb=12.Reads processed: 9200000 reads [20:33, 7408.01 reads/s, read_length=1.23e+10, pass_filter=9.2e+6, reads=9.2e+6, Gb=12.3, perc_pass=100]  2021-01-19 10:54:20,525 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch184.fq using bgzip
Reads processed: 9250000 reads [20:40, 7481.36 reads/s, read_length=1.23e+10, pass_filter=9.2e+6, reads=9.2e+6, Gb=12.3,Reads processed: 9250000 reads [20:40, 7481.36 reads/s, read_length=1.24e+10, pass_filter=9.25e+6, reads=9.25e+6, Gb=12.4, perc_pass=100]2021-01-19 10:54:27,033 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch185.fq using bgzip
Reads processed: 9300000 reads [20:47, 7408.18 reads/s, read_length=1.24e+10, pass_filter=9.25e+6, reads=9.25e+6, Gb=12.Reads processed: 9300000 reads [20:47, 7408.18 reads/s, read_length=1.25e+10, pass_filter=9.3e+6, reads=9.3e+6, Gb=12.5, perc_pass=100]  2021-01-19 10:54:33,970 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch186.fq using bgzip
Reads processed: 9350000 reads [20:53, 7385.42 reads/s, read_length=1.25e+10, pass_filter=9.3e+6, reads=9.3e+6, Gb=12.5,Reads processed: 9350000 reads [20:53, 7385.42 reads/s, read_length=1.25e+10, pass_filter=9.35e+6, reads=9.35e+6, Gb=12.5, perc_pass=100]2021-01-19 10:54:40,753 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch187.fq using bgzip
Reads processed: 9400000 reads [21:00, 7480.81 reads/s, read_length=1.25e+10, pass_filter=9.35e+6, reads=9.35e+6, Gb=12.Reads processed: 9400000 reads [21:00, 7480.81 reads/s, read_length=1.26e+10, pass_filter=9.4e+6, reads=9.4e+6, Gb=12.6, perc_pass=100]  2021-01-19 10:54:47,278 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch188.fq using bgzip
Reads processed: 9450000 reads [21:07, 7437.17 reads/s, read_length=1.26e+10, pass_filter=9.4e+6, reads=9.4e+6, Gb=12.6,Reads processed: 9450000 reads [21:07, 7437.17 reads/s, read_length=1.27e+10, pass_filter=9.45e+6, reads=9.45e+6, Gb=12.7, perc_pass=100]2021-01-19 10:54:54,024 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch189.fq using bgzip
Reads processed: 9500000 reads [21:14, 7388.36 reads/s, read_length=1.27e+10, pass_filter=9.45e+6, reads=9.45e+6, Gb=12.Reads processed: 9500000 reads [21:14, 7388.36 reads/s, read_length=1.27e+10, pass_filter=9.5e+6, reads=9.5e+6, Gb=12.7, perc_pass=100]  2021-01-19 10:55:00,934 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch190.fq using bgzip
Reads processed: 9550000 reads [21:20, 7490.47 reads/s, read_length=1.27e+10, pass_filter=9.5e+6, reads=9.5e+6, Gb=12.7,Reads processed: 9550000 reads [21:20, 7490.47 reads/s, read_length=1.28e+10, pass_filter=9.55e+6, reads=9.55e+6, Gb=12.8, perc_pass=100]2021-01-19 10:55:07,417 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch191.fq using bgzip
Reads processed: 9600000 reads [21:27, 7449.98 reads/s, read_length=1.28e+10, pass_filter=9.55e+6, reads=9.55e+6, Gb=12.Reads processed: 9600000 reads [21:27, 7449.98 reads/s, read_length=1.29e+10, pass_filter=9.6e+6, reads=9.6e+6, Gb=12.9, perc_pass=100]  2021-01-19 10:55:14,160 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch192.fq using bgzip
Reads processed: 9650000 reads [21:34, 7405.73 reads/s, read_length=1.29e+10, pass_filter=9.6e+6, reads=9.6e+6, Gb=12.9,Reads processed: 9650000 reads [21:34, 7405.73 reads/s, read_length=1.29e+10, pass_filter=9.65e+6, reads=9.65e+6, Gb=12.9, perc_pass=100]2021-01-19 10:55:21,031 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch193.fq using bgzip
Reads processed: 9700000 reads [21:40, 7485.37 reads/s, read_length=1.29e+10, pass_filter=9.65e+6, reads=9.65e+6, Gb=12.Reads processed: 9700000 reads [21:40, 7485.37 reads/s, read_length=1.3e+10, pass_filter=9.7e+6, reads=9.7e+6, Gb=13, perc_pass=100]     2021-01-19 10:55:27,556 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch194.fq using bgzip
Reads processed: 9750000 reads [21:47, 7463.01 reads/s, read_length=1.3e+10, pass_filter=9.7e+6, reads=9.7e+6, Gb=13, peReads processed: 9750000 reads [21:47, 7463.01 reads/s, read_length=1.31e+10, pass_filter=9.75e+6, reads=9.75e+6, Gb=13.1, perc_pass=100]2021-01-19 10:55:34,269 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch195.fq using bgzip
Reads processed: 9800000 reads [21:54, 7438.96 reads/s, read_length=1.31e+10, pass_filter=9.75e+6, reads=9.75e+6, Gb=13.Reads processed: 9800000 reads [21:54, 7438.96 reads/s, read_length=1.31e+10, pass_filter=9.8e+6, reads=9.8e+6, Gb=13.1, perc_pass=100]  2021-01-19 10:55:41,131 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch196.fq using bgzip
Reads processed: 9850000 reads [22:00, 7510.46 reads/s, read_length=1.31e+10, pass_filter=9.8e+6, reads=9.8e+6, Gb=13.1,Reads processed: 9850000 reads [22:00, 7510.46 reads/s, read_length=1.32e+10, pass_filter=9.85e+6, reads=9.85e+6, Gb=13.2, perc_pass=100]2021-01-19 10:55:47,568 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch197.fq using bgzip
Reads processed: 9900000 reads [22:07, 7464.63 reads/s, read_length=1.32e+10, pass_filter=9.85e+6, reads=9.85e+6, Gb=13.Reads processed: 9900000 reads [22:07, 7464.63 reads/s, read_length=1.33e+10, pass_filter=9.9e+6, reads=9.9e+6, Gb=13.3, perc_pass=100]  2021-01-19 10:55:54,378 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch198.fq using bgzip
Reads processed: 9950000 reads [22:14, 7383.21 reads/s, read_length=1.33e+10, pass_filter=9.9e+6, reads=9.9e+6, Gb=13.3,Reads processed: 9950000 reads [22:14, 7383.21 reads/s, read_length=1.33e+10, pass_filter=9.95e+6, reads=9.95e+6, Gb=13.3, perc_pass=100]2021-01-19 10:56:01,327 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch199.fq using bgzip
Reads processed: 10000000 reads [22:21, 7384.17 reads/s, read_length=1.33e+10, pass_filter=9.95e+6, reads=9.95e+6, Gb=13Reads processed: 10000000 reads [22:21, 7384.17 reads/s, read_length=1.34e+10, pass_filter=1e+7, reads=1e+7, Gb=13.4, perc_pass=100]      2021-01-19 10:56:08,059 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch200.fq using bgzip
Reads processed: 10050000 reads [22:28, 7367.08 reads/s, read_length=1.34e+10, pass_filter=1e+7, reads=1e+7, Gb=13.4, peReads processed: 10050000 reads [22:28, 7367.08 reads/s, read_length=1.35e+10, pass_filter=1.00e+7, reads=1.00e+7, Gb=13.5, perc_pass=100]2021-01-19 10:56:14,895 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch201.fq using bgzip
Reads processed: 10100000 reads [22:34, 7374.91 reads/s, read_length=1.35e+10, pass_filter=1.00e+7, reads=1.00e+7, Gb=13Reads processed: 10100000 reads [22:34, 7374.91 reads/s, read_length=1.35e+10, pass_filter=1.01e+7, reads=1.01e+7, Gb=13.5, perc_pass=100]2021-01-19 10:56:21,689 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch202.fq using bgzip
Reads processed: 10150000 reads [22:41, 7463.34 reads/s, read_length=1.35e+10, pass_filter=1.01e+7, reads=1.01e+7, Gb=13Reads processed: 10150000 reads [22:41, 7463.34 reads/s, read_length=1.36e+10, pass_filter=1.02e+7, reads=1.02e+7, Gb=13.6, perc_pass=100]2021-01-19 10:56:28,212 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch203.fq using bgzip
Reads processed: 10200000 reads [22:48, 7423.03 reads/s, read_length=1.36e+10, pass_filter=1.02e+7, reads=1.02e+7, Gb=13Reads processed: 10200000 reads [22:48, 7423.03 reads/s, read_length=1.37e+10, pass_filter=1.02e+7, reads=1.02e+7, Gb=13.7, perc_pass=100]2021-01-19 10:56:35,021 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch204.fq using bgzip
Reads processed: 10250000 reads [22:55, 7386.91 reads/s, read_length=1.37e+10, pass_filter=1.02e+7, reads=1.02e+7, Gb=13Reads processed: 10250000 reads [22:55, 7386.91 reads/s, read_length=1.37e+10, pass_filter=1.02e+7, reads=1.02e+7, Gb=13.7, perc_pass=100]2021-01-19 10:56:41,811 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch205.fq using bgzip
Reads processed: 10300000 reads [23:01, 7487.45 reads/s, read_length=1.37e+10, pass_filter=1.02e+7, reads=1.02e+7, Gb=13Reads processed: 10300000 reads [23:01, 7487.45 reads/s, read_length=1.38e+10, pass_filter=1.03e+7, reads=1.03e+7, Gb=13.8, perc_pass=100]2021-01-19 10:56:48,279 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch206.fq using bgzip
Reads processed: 10350000 reads [23:08, 7460.68 reads/s, read_length=1.38e+10, pass_filter=1.03e+7, reads=1.03e+7, Gb=13Reads processed: 10350000 reads [23:08, 7460.68 reads/s, read_length=1.39e+10, pass_filter=1.04e+7, reads=1.04e+7, Gb=13.9, perc_pass=100]2021-01-19 10:56:55,040 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch207.fq using bgzip
Reads processed: 10400000 reads [23:14, 7459.09 reads/s, read_length=1.39e+10, pass_filter=1.04e+7, reads=1.04e+7, Gb=13Reads processed: 10400000 reads [23:14, 7459.09 reads/s, read_length=1.39e+10, pass_filter=1.04e+7, reads=1.04e+7, Gb=13.9, perc_pass=100]2021-01-19 10:57:01,734 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch208.fq using bgzip
Reads processed: 10450000 reads [23:21, 7526.47 reads/s, read_length=1.39e+10, pass_filter=1.04e+7, reads=1.04e+7, Gb=13Reads processed: 10450000 reads [23:21, 7526.47 reads/s, read_length=1.4e+10, pass_filter=1.04e+7, reads=1.04e+7, Gb=14, perc_pass=100]   2021-01-19 10:57:08,299 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch209.fq using bgzip
Reads processed: 10500000 reads [23:28, 7465.97 reads/s, read_length=1.4e+10, pass_filter=1.04e+7, reads=1.04e+7, Gb=14,Reads processed: 10500000 reads [23:28, 7465.97 reads/s, read_length=1.41e+10, pass_filter=1.05e+7, reads=1.05e+7, Gb=14.1, perc_pass=100]2021-01-19 10:57:15,126 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch210.fq using bgzip
Reads processed: 10550000 reads [23:35, 7386.62 reads/s, read_length=1.41e+10, pass_filter=1.05e+7, reads=1.05e+7, Gb=14Reads processed: 10550000 reads [23:35, 7386.62 reads/s, read_length=1.41e+10, pass_filter=1.06e+7, reads=1.06e+7, Gb=14.1, perc_pass=100]2021-01-19 10:57:22,042 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch211.fq using bgzip
Reads processed: 10600000 reads [23:41, 7419.92 reads/s, read_length=1.41e+10, pass_filter=1.06e+7, reads=1.06e+7, Gb=14Reads processed: 10600000 reads [23:41, 7419.92 reads/s, read_length=1.42e+10, pass_filter=1.06e+7, reads=1.06e+7, Gb=14.2, perc_pass=100]2021-01-19 10:57:28,773 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch212.fq using bgzip
Reads processed: 10650000 reads [23:48, 7368.77 reads/s, read_length=1.42e+10, pass_filter=1.06e+7, reads=1.06e+7, Gb=14Reads processed: 10650000 reads [23:48, 7368.77 reads/s, read_length=1.43e+10, pass_filter=1.06e+7, reads=1.06e+7, Gb=14.3, perc_pass=100]2021-01-19 10:57:35,606 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch213.fq using bgzip
Reads processed: 10700000 reads [23:55, 7347.35 reads/s, read_length=1.43e+10, pass_filter=1.06e+7, reads=1.06e+7, Gb=14Reads processed: 10700000 reads [23:55, 7347.35 reads/s, read_length=1.43e+10, pass_filter=1.07e+7, reads=1.07e+7, Gb=14.3, perc_pass=100]2021-01-19 10:57:42,484 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch214.fq using bgzip
Reads processed: 10750000 reads [24:02, 7439.30 reads/s, read_length=1.43e+10, pass_filter=1.07e+7, reads=1.07e+7, Gb=14Reads processed: 10750000 reads [24:02, 7439.30 reads/s, read_length=1.44e+10, pass_filter=1.08e+7, reads=1.08e+7, Gb=14.4, perc_pass=100]2021-01-19 10:57:48,962 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch215.fq using bgzip
Reads processed: 10800000 reads [24:09, 7381.17 reads/s, read_length=1.44e+10, pass_filter=1.08e+7, reads=1.08e+7, Gb=14Reads processed: 10800000 reads [24:09, 7381.17 reads/s, read_length=1.45e+10, pass_filter=1.08e+7, reads=1.08e+7, Gb=14.5, perc_pass=100]2021-01-19 10:57:55,961 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch216.fq using bgzip
Reads processed: 10850000 reads [24:16, 7312.93 reads/s, read_length=1.45e+10, pass_filter=1.08e+7, reads=1.08e+7, Gb=14Reads processed: 10850000 reads [24:16, 7312.93 reads/s, read_length=1.45e+10, pass_filter=1.08e+7, reads=1.08e+7, Gb=14.5, perc_pass=100]2021-01-19 10:58:02,823 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch217.fq using bgzip
Reads processed: 10900000 reads [24:22, 7445.78 reads/s, read_length=1.45e+10, pass_filter=1.08e+7, reads=1.08e+7, Gb=14Reads processed: 10900000 reads [24:22, 7445.78 reads/s, read_length=1.46e+10, pass_filter=1.09e+7, reads=1.09e+7, Gb=14.6, perc_pass=100]2021-01-19 10:58:09,304 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch218.fq using bgzip
Reads processed: 10950000 reads [24:29, 7413.04 reads/s, read_length=1.46e+10, pass_filter=1.09e+7, reads=1.09e+7, Gb=14Reads processed: 10950000 reads [24:29, 7413.04 reads/s, read_length=1.47e+10, pass_filter=1.1e+7, reads=1.1e+7, Gb=14.7, perc_pass=100]  2021-01-19 10:58:16,162 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch219.fq using bgzip
Reads processed: 11000000 reads [24:36, 7367.88 reads/s, read_length=1.47e+10, pass_filter=1.1e+7, reads=1.1e+7, Gb=14.7Reads processed: 11000000 reads [24:36, 7367.88 reads/s, read_length=1.47e+10, pass_filter=1.1e+7, reads=1.1e+7, Gb=14.7, perc_pass=100]2021-01-19 10:58:22,959 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch220.fq using bgzip
Reads processed: 11050000 reads [24:42, 7465.24 reads/s, read_length=1.47e+10, pass_filter=1.1e+7, reads=1.1e+7, Gb=14.7Reads processed: 11050000 reads [24:42, 7465.24 reads/s, read_length=1.48e+10, pass_filter=1.10e+7, reads=1.10e+7, Gb=14.8, perc_pass=100]2021-01-19 10:58:29,503 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch221.fq using bgzip
Reads processed: 11100000 reads [24:49, 7389.57 reads/s, read_length=1.48e+10, pass_filter=1.10e+7, reads=1.10e+7, Gb=14Reads processed: 11100000 reads [24:49, 7389.57 reads/s, read_length=1.49e+10, pass_filter=1.11e+7, reads=1.11e+7, Gb=14.9, perc_pass=100]2021-01-19 10:58:36,411 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch222.fq using bgzip
Reads processed: 11150000 reads [24:56, 7345.60 reads/s, read_length=1.49e+10, pass_filter=1.11e+7, reads=1.11e+7, Gb=14Reads processed: 11150000 reads [24:56, 7345.60 reads/s, read_length=1.49e+10, pass_filter=1.12e+7, reads=1.12e+7, Gb=14.9, perc_pass=100]2021-01-19 10:58:43,282 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch223.fq using bgzip
Reads processed: 11200000 reads [25:03, 7442.06 reads/s, read_length=1.49e+10, pass_filter=1.12e+7, reads=1.12e+7, Gb=14Reads processed: 11200000 reads [25:03, 7442.06 reads/s, read_length=1.5e+10, pass_filter=1.12e+7, reads=1.12e+7, Gb=15, perc_pass=100]   2021-01-19 10:58:49,821 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch224.fq using bgzip
Reads processed: 11250000 reads [25:09, 7387.53 reads/s, read_length=1.5e+10, pass_filter=1.12e+7, reads=1.12e+7, Gb=15,Reads processed: 11250000 reads [25:09, 7387.53 reads/s, read_length=1.51e+10, pass_filter=1.12e+7, reads=1.12e+7, Gb=15.1, perc_pass=100]2021-01-19 10:58:56,700 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch225.fq using bgzip
Reads processed: 11300000 reads [25:16, 7381.24 reads/s, read_length=1.51e+10, pass_filter=1.12e+7, reads=1.12e+7, Gb=15Reads processed: 11300000 reads [25:16, 7381.24 reads/s, read_length=1.51e+10, pass_filter=1.13e+7, reads=1.13e+7, Gb=15.1, perc_pass=100]2021-01-19 10:59:03,456 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch226.fq using bgzip
Reads processed: 11350000 reads [25:23, 7470.71 reads/s, read_length=1.51e+10, pass_filter=1.13e+7, reads=1.13e+7, Gb=15Reads processed: 11350000 reads [25:23, 7470.71 reads/s, read_length=1.52e+10, pass_filter=1.14e+7, reads=1.14e+7, Gb=15.2, perc_pass=100]2021-01-19 10:59:09,992 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch227.fq using bgzip
Reads processed: 11400000 reads [25:30, 7386.73 reads/s, read_length=1.52e+10, pass_filter=1.14e+7, reads=1.14e+7, Gb=15Reads processed: 11400000 reads [25:30, 7386.73 reads/s, read_length=1.53e+10, pass_filter=1.14e+7, reads=1.14e+7, Gb=15.3, perc_pass=100]2021-01-19 10:59:16,939 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch228.fq using bgzip
Reads processed: 11450000 reads [25:37, 7327.83 reads/s, read_length=1.53e+10, pass_filter=1.14e+7, reads=1.14e+7, Gb=15Reads processed: 11450000 reads [25:37, 7327.83 reads/s, read_length=1.53e+10, pass_filter=1.14e+7, reads=1.14e+7, Gb=15.3, perc_pass=100]2021-01-19 10:59:23,929 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch229.fq using bgzip
Reads processed: 11500000 reads [25:43, 7435.48 reads/s, read_length=1.53e+10, pass_filter=1.14e+7, reads=1.14e+7, Gb=15Reads processed: 11500000 reads [25:43, 7435.48 reads/s, read_length=1.54e+10, pass_filter=1.15e+7, reads=1.15e+7, Gb=15.4, perc_pass=100]2021-01-19 10:59:30,377 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch230.fq using bgzip
Reads processed: 11550000 reads [25:50, 7370.94 reads/s, read_length=1.54e+10, pass_filter=1.15e+7, reads=1.15e+7, Gb=15Reads processed: 11550000 reads [25:50, 7370.94 reads/s, read_length=1.55e+10, pass_filter=1.16e+7, reads=1.16e+7, Gb=15.5, perc_pass=100]2021-01-19 10:59:37,288 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch231.fq using bgzip
Reads processed: 11600000 reads [25:57, 7357.05 reads/s, read_length=1.55e+10, pass_filter=1.16e+7, reads=1.16e+7, Gb=15Reads processed: 11600000 reads [25:57, 7357.05 reads/s, read_length=1.55e+10, pass_filter=1.16e+7, reads=1.16e+7, Gb=15.5, perc_pass=100]2021-01-19 10:59:44,225 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch232.fq using bgzip
Reads processed: 11650000 reads [26:04, 7382.90 reads/s, read_length=1.55e+10, pass_filter=1.16e+7, reads=1.16e+7, Gb=15Reads processed: 11650000 reads [26:04, 7382.90 reads/s, read_length=1.56e+10, pass_filter=1.16e+7, reads=1.16e+7, Gb=15.6, perc_pass=100]2021-01-19 10:59:50,861 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch233.fq using bgzip
Reads processed: 11700000 reads [26:11, 7316.40 reads/s, read_length=1.56e+10, pass_filter=1.16e+7, reads=1.16e+7, Gb=15Reads processed: 11700000 reads [26:11, 7316.40 reads/s, read_length=1.57e+10, pass_filter=1.17e+7, reads=1.17e+7, Gb=15.7, perc_pass=100]2021-01-19 10:59:57,820 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch234.fq using bgzip
Reads processed: 11750000 reads [26:17, 7305.15 reads/s, read_length=1.57e+10, pass_filter=1.17e+7, reads=1.17e+7, Gb=15Reads processed: 11750000 reads [26:17, 7305.15 reads/s, read_length=1.57e+10, pass_filter=1.18e+7, reads=1.18e+7, Gb=15.7, perc_pass=100]2021-01-19 11:00:04,694 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch235.fq using bgzip
Reads processed: 11800000 reads [26:24, 7443.56 reads/s, read_length=1.57e+10, pass_filter=1.18e+7, reads=1.18e+7, Gb=15Reads processed: 11800000 reads [26:24, 7443.56 reads/s, read_length=1.58e+10, pass_filter=1.18e+7, reads=1.18e+7, Gb=15.8, perc_pass=100]2021-01-19 11:00:11,162 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch236.fq using bgzip
Reads processed: 11850000 reads [26:31, 7376.06 reads/s, read_length=1.58e+10, pass_filter=1.18e+7, reads=1.18e+7, Gb=15Reads processed: 11850000 reads [26:31, 7376.06 reads/s, read_length=1.59e+10, pass_filter=1.18e+7, reads=1.18e+7, Gb=15.9, perc_pass=100]2021-01-19 11:00:18,106 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch237.fq using bgzip
Reads processed: 11900000 reads [26:38, 7319.51 reads/s, read_length=1.59e+10, pass_filter=1.18e+7, reads=1.18e+7, Gb=15Reads processed: 11900000 reads [26:38, 7319.51 reads/s, read_length=1.59e+10, pass_filter=1.19e+7, reads=1.19e+7, Gb=15.9, perc_pass=100]2021-01-19 11:00:24,982 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch238.fq using bgzip
Reads processed: 11950000 reads [26:44, 7447.52 reads/s, read_length=1.59e+10, pass_filter=1.19e+7, reads=1.19e+7, Gb=15Reads processed: 11950000 reads [26:44, 7447.52 reads/s, read_length=1.6e+10, pass_filter=1.2e+7, reads=1.2e+7, Gb=16, perc_pass=100]     2021-01-19 11:00:31,397 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch239.fq using bgzip
Reads processed: 12000000 reads [26:51, 7406.08 reads/s, read_length=1.6e+10, pass_filter=1.2e+7, reads=1.2e+7, Gb=16, pReads processed: 12000000 reads [26:51, 7406.08 reads/s, read_length=1.61e+10, pass_filter=1.2e+7, reads=1.2e+7, Gb=16.1, perc_pass=100]2021-01-19 11:00:38,282 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch240.fq using bgzip
Reads processed: 12050000 reads [26:58, 7331.34 reads/s, read_length=1.61e+10, pass_filter=1.2e+7, reads=1.2e+7, Gb=16.1Reads processed: 12050000 reads [26:58, 7331.34 reads/s, read_length=1.62e+10, pass_filter=1.20e+7, reads=1.20e+7, Gb=16.2, perc_pass=100]2021-01-19 11:00:45,259 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch241.fq using bgzip
Reads processed: 12100000 reads [27:04, 7449.22 reads/s, read_length=1.62e+10, pass_filter=1.20e+7, reads=1.20e+7, Gb=16Reads processed: 12100000 reads [27:04, 7449.22 reads/s, read_length=1.62e+10, pass_filter=1.21e+7, reads=1.21e+7, Gb=16.2, perc_pass=100]2021-01-19 11:00:51,673 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch242.fq using bgzip
Reads processed: 12150000 reads [27:11, 7443.19 reads/s, read_length=1.62e+10, pass_filter=1.21e+7, reads=1.21e+7, Gb=16Reads processed: 12150000 reads [27:11, 7443.19 reads/s, read_length=1.63e+10, pass_filter=1.22e+7, reads=1.22e+7, Gb=16.3, perc_pass=100]2021-01-19 11:00:58,441 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch243.fq using bgzip
Reads processed: 12200000 reads [27:18, 7368.95 reads/s, read_length=1.63e+10, pass_filter=1.22e+7, reads=1.22e+7, Gb=16Reads processed: 12200000 reads [27:18, 7368.95 reads/s, read_length=1.64e+10, pass_filter=1.22e+7, reads=1.22e+7, Gb=16.4, perc_pass=100]2021-01-19 11:01:05,396 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch244.fq using bgzip
Reads processed: 12250000 reads [27:25, 7469.47 reads/s, read_length=1.64e+10, pass_filter=1.22e+7, reads=1.22e+7, Gb=16Reads processed: 12250000 reads [27:25, 7469.47 reads/s, read_length=1.64e+10, pass_filter=1.22e+7, reads=1.22e+7, Gb=16.4, perc_pass=100]2021-01-19 11:01:11,876 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch245.fq using bgzip
Reads processed: 12300000 reads [27:31, 7398.93 reads/s, read_length=1.64e+10, pass_filter=1.22e+7, reads=1.22e+7, Gb=16Reads processed: 12300000 reads [27:31, 7398.93 reads/s, read_length=1.65e+10, pass_filter=1.23e+7, reads=1.23e+7, Gb=16.5, perc_pass=100]2021-01-19 11:01:18,757 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch246.fq using bgzip
Reads processed: 12350000 reads [27:38, 7389.14 reads/s, read_length=1.65e+10, pass_filter=1.23e+7, reads=1.23e+7, Gb=16Reads processed: 12350000 reads [27:38, 7389.14 reads/s, read_length=1.66e+10, pass_filter=1.24e+7, reads=1.24e+7, Gb=16.6, perc_pass=100]2021-01-19 11:01:25,567 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch247.fq using bgzip
Reads processed: 12400000 reads [27:45, 7441.93 reads/s, read_length=1.66e+10, pass_filter=1.24e+7, reads=1.24e+7, Gb=16Reads processed: 12400000 reads [27:45, 7441.93 reads/s, read_length=1.66e+10, pass_filter=1.24e+7, reads=1.24e+7, Gb=16.6, perc_pass=100]2021-01-19 11:01:32,204 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch248.fq using bgzip
Reads processed: 12450000 reads [27:52, 7386.38 reads/s, read_length=1.66e+10, pass_filter=1.24e+7, reads=1.24e+7, Gb=16Reads processed: 12450000 reads [27:52, 7386.38 reads/s, read_length=1.67e+10, pass_filter=1.24e+7, reads=1.24e+7, Gb=16.7, perc_pass=100]2021-01-19 11:01:39,049 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch249.fq using bgzip
Reads processed: 12500000 reads [27:59, 7346.16 reads/s, read_length=1.67e+10, pass_filter=1.24e+7, reads=1.24e+7, Gb=16Reads processed: 12500000 reads [27:59, 7346.16 reads/s, read_length=1.68e+10, pass_filter=1.25e+7, reads=1.25e+7, Gb=16.8, perc_pass=100]2021-01-19 11:01:45,977 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch250.fq using bgzip
Reads processed: 12550000 reads [28:05, 7425.61 reads/s, read_length=1.68e+10, pass_filter=1.25e+7, reads=1.25e+7, Gb=16Reads processed: 12550000 reads [28:05, 7425.61 reads/s, read_length=1.68e+10, pass_filter=1.26e+7, reads=1.26e+7, Gb=16.8, perc_pass=100]2021-01-19 11:01:52,568 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch251.fq using bgzip
Reads processed: 12600000 reads [28:12, 7341.65 reads/s, read_length=1.68e+10, pass_filter=1.26e+7, reads=1.26e+7, Gb=16Reads processed: 12600000 reads [28:12, 7341.65 reads/s, read_length=1.69e+10, pass_filter=1.26e+7, reads=1.26e+7, Gb=16.9, perc_pass=100]2021-01-19 11:01:59,486 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch252.fq using bgzip
Reads processed: 12650000 reads [28:19, 7329.96 reads/s, read_length=1.69e+10, pass_filter=1.26e+7, reads=1.26e+7, Gb=16Reads processed: 12650000 reads [28:19, 7329.96 reads/s, read_length=1.7e+10, pass_filter=1.26e+7, reads=1.26e+7, Gb=17, perc_pass=100]   2021-01-19 11:02:06,386 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch253.fq using bgzip
Reads processed: 12700000 reads [28:25, 7503.28 reads/s, read_length=1.7e+10, pass_filter=1.26e+7, reads=1.26e+7, Gb=17,Reads processed: 12700000 reads [28:25, 7503.28 reads/s, read_length=1.7e+10, pass_filter=1.27e+7, reads=1.27e+7, Gb=17, perc_pass=100]2021-01-19 11:02:12,622 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch254.fq using bgzip
Reads processed: 12707505 reads [28:29, 6352.85 reads/s, read_length=1.7e+10, pass_filter=1.27e+7, reads=1.27e+7, Gb=17,Reads processed: 12707505 reads [28:29, 6352.85 reads/s, read_length=1.7e+10, pass_filter=1.27e+7, reads=1.27e+7, Gb=17, perc_pass=100]2021-01-19 11:02:16,176 - pore_c.io - INFO - Compressing results/basecall/DpnII_run01.rd.batch255.fq using bgzip
Reads processed: 12707505 reads [28:38, 7395.12 reads/s, read_length=1.7e+10, pass_filter=1.27e+7, reads=1.27e+7, Gb=17, perc_pass=100]

2021-01-19 11:02:24,572 - pore_c.analyses.reads - INFO - Finished processing /data/sag/2020/EDa_20010056_porec/renamed/FAO62992rb.fastq:
             num_sequences  total_bases         mean  min    max   N50    Q25    Q50     Q75
read_subset
all               12707505  17031798101  1340.294425  500  49868  1579  676.0  950.0  1509.0
pass              12707505  17031798101  1340.294425  500  49868  1579  676.0  950.0  1509.0

2021-01-19 11:02:24,715 - pore_c - INFO - Created catalog for results: <RawReadCatalog reads=12707505 bases=17,031,798,101>

My wild guess would be, that the pore_c command exits with a non-zero error code even when it runs succesfully? Or is there something else going on?

eharr commented 3 years ago

@bistace and @dikkeaap - the "ValueError: No objects to concatenate" suggests that the test fastq is empty. Can you check the contents of .test/resources/GM12878_NlaIII_reads.fq.gz to make sure it's a valid fastq file - sometimes if you don't have git-lfs installed it will put a text file in it's place.

@dikkeaap for your other error I haven't seen that error before. The only think I can think to try is to run with --cores 1 to see if it gets past the import_basecalls step.

dikkeaap commented 3 years ago

I can confirm that the issue related to the test data set is indeed due to git-lfs not being installed.

However, the other error persists even with --cores 1 . But - I found the error! An older version of Pore-C-Snakemake (which I used before) has the following environment.yaml:

name: pore_c_snakemake
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python == 3.6
  - snakemake-minimal == 5.5.4
  - pandas == 0.25.1
  - python-box == 3.4.3

However, the current version of the file looks like this:

name: pore-c-snakemake
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- pandas ==1.0.5
- python-box ==4.2.3
- snakemake ==5.19.3

The instructions in README.md tell me to conda activate pore_c_snakemake, which activates the old version! Instead, the README.md should tell me to conda activate pore-c-snakemake ...

sklages commented 2 years ago

@bistace and @dikkeaap - the "ValueError: No objects to concatenate" suggests that the test fastq is empty. Can you check the contents of .test/resources/GM12878_NlaIII_reads.fq.gz to make sure it's a valid fastq file - sometimes if you don't have git-lfs installed it will put a text file in it's place.

Just curious - as I ran into this as well - why not using a simple wget or curl in case git-lfs is not installed on the target system?

claumer commented 2 years ago

I'm having the same test error too, in a fresh install:

(pore-c-snakemake) [claumer@BUCEPHALUS Pore-C-Snakemake]$ snakemake --use-conda test --cores 1 --config=output_dir=results.test Building DAG of jobs... Creating conda environment envs/juicer_tools.yml... Downloading and installing remote packages. Environment for envs/juicer_tools.yml created (location: .snakemake/conda/016f1bc3) Creating conda environment envs/pairtools.yml... Downloading and installing remote packages. Environment for envs/pairtools.yml created (location: .snakemake/conda/94fbd553) Creating conda environment envs/pore_c.yml... Downloading and installing remote packages. Environment for envs/pore_c.yml created (location: .snakemake/conda/38fd0d31) Creating conda environment envs/pairix.yml... Downloading and installing remote packages. Environment for envs/pairix.yml created (location: .snakemake/conda/7ca0bc92) Creating conda environment envs/cooler.yml... Downloading and installing remote packages. Environment for envs/cooler.yml created (location: .snakemake/conda/2264cc1a) Using shell: /usr/bin/bash Provided cores: 1 (use --cores to define parallelism) Rules claiming more threads will be scaled down. Job counts: count jobs 2 add_refgenome 2 create_contact_fofn 2 create_hic 2 create_hicRef 2 create_mcool_file 2 import_basecalls 2 index_pairs 2 merge_contact_files 2 summarise_contacts 1 test 2 to_cooler 2 to_mnd 2 to_salsa_bed 2 to_sorted_pairs 2 to_unsorted_pairs 2 virtual_digest 31

[Wed Jun 22 16:28:09 2022] checkpoint import_basecalls: output: results.test/basecall/NlaIII_run02.rd.catalog.yaml, results.test/basecall/NlaIII_run02.rd.summary.csv, results.test/basecall/NlaIII_run02.rd.read_metadata.parquet log: results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log jobid: 16 benchmark: results.test/benchmarks/results.test/basecall/NlaIII_run02.rd.catalog.yaml.bench.txt wildcards: enzyme=NlaIII, run_id=run02 Downstream jobs will be updated after completion.

Activating conda environment: /home/claumer/Pore-C-Snakemake/.snakemake/conda/38fd0d31 [Wed Jun 22 16:28:11 2022] Error in rule import_basecalls: jobid: 16 output: results.test/basecall/NlaIII_run02.rd.catalog.yaml, results.test/basecall/NlaIII_run02.rd.summary.csv, results.test/basecall/NlaIII_run02.rd.read_metadata.parquet log: results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log (check log file(s) for error message) conda-env: /home/claumer/Pore-C-Snakemake/.snakemake/conda/38fd0d31 shell: pore_c --dask-scheduler-port 0 --dask-num-workers 1 reads prepare .test/resources/GM12878_NlaIII_reads.fq.gz results.test/basecall/NlaIII_run02.rd --max-read-length 100000 --batch-size 50000 2> results.test/logs/results.test/basecall/NlaIII_run02.rd.catalog.yaml.log (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: /home/claumer/Pore-C-Snakemake/.snakemake/log/2022-06-22T161841.297048.snakemake.log