Open Kirk3gaard opened 2 years ago
Hey Rasmus,
I am also currently facing these questions. I guess that it would be useful and nice from ONT side to give some tips about this. Although I think that for the wetlab part you might need to refer to what have been published, for example:
On my case I have the sequence PCR data from a DNA sample with extended alphabet, and I am tweaking Bonito to train with this data. I have found that some adjustments in the code were necessary to make it work. Hopefully I can share more about it once this work progresses.
Hi
It would be cool if there was a wiki section that would include the entire approach (including the wetlab part) of training new models. e.g. what would be the best experimental design to train models for predicting the incorporation of alternative nucleotides?
Best regards Rasmus