How long would it take to convert downloaded dna_r9.4.1.hdf5 training dataset in Tesla V100?

nanoporetech / bonito

A PyTorch Basecaller for Oxford Nanopore Reads

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How long would it take to convert downloaded dna_r9.4.1.hdf5 training dataset in Tesla V100? #285

Open Saranya-nanobiophotonics-lab opened 2 years ago

Saranya-nanobiophotonics-lab commented 2 years ago

Hi @iiSeymour We are using Tesla V100. We have used the "bonito download --training" to download bonito training dataset. It showed around 12Gb. Now, it is more than 17 hrs since we started the download. It shows "converting dna_r9.4.1.hdf5". How long would this take ? We want to check whether there is any issue from our end as it is taking so long.

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Saranya

Prithvi-Velicheti commented 2 years ago

same issue for me. convert taking forever and automatically getting killed. bonitoconvert