nanoporetech / bonito

A PyTorch Basecaller for Oxford Nanopore Reads
https://nanoporetech.com/
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Train older models #351

Closed srrmtt closed 5 months ago

srrmtt commented 1 year ago

Good morning @iiSeymour, I'm working on an older version of the bonito basecaller, in particular the one that was inspired by the QuartzNet architecture, I was wondering if the training dataset for that particular architecture is still the same that I can get calling bonito download --training or I can find it somewhere else. I was also wondering if there is some validation dataset for this model still available and where I can find it. Thanks in advance, best regards

iiSeymour commented 6 months ago

Hi @srrmtt yes, the training dataset is still the same and can be downloaded with bonito download --training.