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nanoporetech / bonito

A PyTorch Basecaller for Oxford Nanopore Reads
https://nanoporetech.com/
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DNA 9.4 model info #360

Open lkwhite opened 10 months ago

lkwhite commented 10 months ago

Hi there,

I'm working on a weird use case where we're calling some DNA sequence put through R9.4 pores. I can see that the following models are still available, but I'm unclear what kits/helicases they were trained on. Is there any more documentation for these I can find somewhere?

r9_models = [
    "n8c07gc9ro09zt0ivgcoeuz6krnwsnf6.zip", # dna_r9.4.1@v1
    "nas0uhf46fd1lh2jndhx2a54a9vvhxp4.zip", # dna_r9.4.1@v2
    "1wodp3ur4jhvqvu5leowfg6lrw54jxp2.zip", # dna_r9.4.1@v3
    "uetgwsnb8yfqvuyoka8p09mxilgskqc7.zip", # dna_r9.4.1@v3.1
    "47t2y48zw4waly25lmzx6sagf4bbbqqz.zip", # dna_r9.4.1@v3.2
    "hrv649cvx8lvomu1u0tsd47e5u2bbabt.zip", # dna_r9.4.1@v3.3
    "arqi4qwcj9btsd6bbjsnlbai0s6dg8yd.zip",
]
lkwhite commented 3 months ago

Re-bumping this in hope of a response.