Training data for R10.4, 4 and 5kHz?

nanoporetech / bonito

A PyTorch Basecaller for Oxford Nanopore Reads

https://nanoporetech.com/

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Closed rainwala closed 5 months ago

rainwala commented 8 months ago

Hello, do you have training data for R10.4, 4 and 5kHz? Or is that available via dorado? Or not at all?

iiSeymour commented 8 months ago

Hi @rainwala

Bonito only provides a r941 training set right now but we will look at adding an updated version.

jorisbalc commented 6 months ago

Is there any sort of estimation for when the newer r10.4 5kHz training data would be available? Really looking forward to this.

iiSeymour commented 5 months ago

@jorisbalc @rainwala bonito v0.8.1 added new examples training sets.