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nanoporetech / dorado

Oxford Nanopore's Basecaller
https://nanoporetech.com/
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Request to make run name in output files from dorado demux an option #1094

Open wshropshire opened 1 month ago

wshropshire commented 1 month ago

Hello,

Is there a way that for >=0.8.1 dorado basecallers that the appending of run-name on dorado demux fastq files be an option? I have a custom script that is identifying fastq files based off of sample sheet and this breaks downstream processing. I can use a sed function if necessary, but having this as an option would be great....

Thanks!

Will

HalfPhoton commented 1 month ago

Hi @wshropshire, We'll discuss adding this as a feature.

Similar issues to add more context: https://github.com/nanoporetech/dorado/issues/1077 https://github.com/nanoporetech/dorado/issues/1026

Kind regards, Rich

sklages commented 4 weeks ago

@wshropshire @HalfPhoton - yes, having this as an option is the far more better better way. For now I need to fix some workflows/scripts ..