nanoporetech / dorado

Oxford Nanopore's Basecaller
https://nanoporetech.com/
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m5C and inosine base-calling models argument not found #1122

Closed kamaloxfordpathology closed 2 weeks ago

kamaloxfordpathology commented 2 weeks ago

Hi,

I wanted to examine m5C and inosine modification on ONT direct RNA sequencing data. However, dorado does not seem to recognise these as valid arguments. Kindly the error log

[2024-11-07 16:53:39.183] [error] Unknown modification variant: 'm5C@v1' - Choices: pseU, m6A_DRACH, m6A, 6mA, 5mC, 5mCG_5hmCG, 5mCG, 5mC_5hmC, 4mC_5mC [2024-11-07 16:53:39.184] [error] Failed to parse model argument. Failed to parse modified model arguments

malton-ont commented 2 weeks ago

@kamaloxfordpathology,

These modification models were introduced in dorado-0.8.0. Please ensure you are running at least this version.

kamaloxfordpathology commented 2 weeks ago

Thanks!. It works now :)