nanoporetech / dorado

Oxford Nanopore's Basecaller
https://nanoporetech.com/
Other
477 stars 59 forks source link

GpC methylation using dorado #670

Closed thachnguyen closed 6 months ago

thachnguyen commented 6 months ago

Dear authors, I have a question regarding the detection of methylations type. Can we use Dorado to detect GpC?

Thank you very much

ArtRand commented 6 months ago

Hello @thachnguyen,

Yes it can. Use one of the "all-context" cytosine models:

Hope this helps.

A

thachnguyen commented 6 months ago

I got it, thank for your support