Closed DKTMPELRN closed 3 months ago
Hi @DKTMPELRN,
What version of cmake
do you have?
Kind regards, Rich
Hello, I think I have a very similar issue. I am using WSL too, this is the log:
Consolidate compiler generated dependencies of target dorado_torch_lib
[ 1%] Built target dorado_torch_lib
[ 5%] Built target htslib_project
[ 8%] Built target streamvbyte
Consolidate compiler generated dependencies of target vbz
[ 10%] Built target vbz
Consolidate compiler generated dependencies of target vbz_hdf_plugin
[ 11%] Built target vbz_hdf_plugin
Consolidate compiler generated dependencies of target spdlog
[ 15%] Built target spdlog
Consolidate compiler generated dependencies of target minimap2
[ 24%] Built target minimap2
Consolidate compiler generated dependencies of target edlib
[ 25%] Built target edlib
Consolidate compiler generated dependencies of target dorado_pch
[ 26%] Built target dorado_pch
Consolidate compiler generated dependencies of target dorado_utils
[ 36%] Built target dorado_utils
Consolidate compiler generated dependencies of target dorado_basecall
[ 40%] Built target dorado_basecall
Consolidate compiler generated dependencies of target dorado_modbase
[ 44%] Built target dorado_modbase
Consolidate compiler generated dependencies of target dorado_lib
[ 62%] Built target dorado_lib
Consolidate compiler generated dependencies of target minizip
[ 68%] Built target minizip
Consolidate compiler generated dependencies of target elzip
[ 69%] Built target elzip
Consolidate compiler generated dependencies of target dorado_models_lib
[ 71%] Built target dorado_models_lib
Consolidate compiler generated dependencies of target dorado_io_lib
[ 73%] Built target dorado_io_lib
Consolidate compiler generated dependencies of target dorado
gmake[2]: *** No rule to make target '/usr/lib64/libcufft_static_nocallback.a', needed by 'bin/dorado'. Stop.
gmake[1]: *** [CMakeFiles/Makefile2:456: CMakeFiles/dorado.dir/all] Error 2
gmake: *** [Makefile:166: all] Error 2
I have cmake version 3.22.1
@janka000 you don't need to compile dorado from source as we provide binaries here https://github.com/nanoporetech/dorado?tab=readme-ov-file#installation
@iiSeymour Sorry in advance if my question is too obvious. I encountered the same error described above when installing Dorado on a Linux machine. I then downloaded the binary "dorado-0.5.3-linux-x64" but I'm not sure where to place the "bin" and "lib" folders so that I can use Dorado in MinKNOW. Any advice would be greatly appreciated!
@ChengzheDuan,
MinKNOW uses the dorado_basecall_server
for basecalling. This is a different (non-public) project which utilises dorado code as a submodule but is not the same executable. You can't drop just dorado into MinKNOW I'm afraid.
@janka000, @DKTMPELRN - if you want to build from source, please update to CMake >= 3.23. We will update dorado in a future release to correctly enforce this requirement.
Dorado not finding /usr/lib64/libcufft_statis_nocallback.a
I'm using dorado for the first time, going along with the documentation quick installation instructions. I made it to the line
cmake --build cmake-build --config Release -j 4
, but it gives:All the dependency packages installed and are updated.
Steps to reproduce the issue:
Follow along with the installation tutorial in WSL.
Run environment:
Logs