general question; not an issue

nanoporetech / dorado

Oxford Nanopore's Basecaller

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Closed mocherry closed 5 months ago

mocherry commented 5 months ago

Dear all,

when aligning data from direct RNA-sequencing (RNA004), what is your recommendation? Aligning to genome or transcript reference?

Thanks and best, Matthias

HalfPhoton commented 5 months ago

Hi @mocherry, as this is not a Dorado issue please submit this question to ONT technical support

Kind regards, Rich