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nanoporetech / dorado

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https://nanoporetech.com/
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samplesheet.csv contains invalid column experiment_id #781

Closed mbacino closed 5 months ago

mbacino commented 5 months ago

I have tried the sample sheet in multiple formats:

experiment_id,kit ,barcode hit,SQK-RBK114-96,barcode01

flow_cell_product_code,kit,sample_id,experiment_id,barcode,alias FLO-MIN114,SQK-RBK114-96,hit ,04_04_24,barcode01,A1

HalfPhoton commented 5 months ago

@mbacino, Please complete the issue template.

Does your sample sheet comform to the specification?

HalfPhoton commented 5 months ago

Specifically:

At a minimum a sample sheet must contain kit, experiment_id and one of position_id or flow_cell_id. All rows in a sample sheet must contain the same experiment_id.

mbacino commented 5 months ago

I have tried that and get an error. I have a log of over 10 failed runs where I have made slight changes to the sample sheet.

From: Richard Harris @.> Sent: Tuesday, April 30, 2024 3:14 PM To: nanoporetech/dorado @.> Cc: Bacino, Margot @.>; Mention @.> Subject: Re: [nanoporetech/dorado] samplesheet.csv contains invalid column experiment_id (Issue #781)

Specifically: At a minimum a sample sheet must contain kit, experiment_id and one of position_id or flow_cell_id. All rows in a sample sheet must contain the same experiment_id. — Reply to this email directly, view it on GitHub, or unsubscribe. You ZjQcmQRYFpfptBannerStart This Message Is From an External Sender This message came from outside your organization.

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Specifically:

At a minimum a sample sheet must contain kit, experiment_id and one of position_id or flow_cell_id. All rows in a sample sheet must contain the same experiment_id.

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malton-ont commented 5 months ago

Closing, duplicate of #782