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nanoporetech / dorado

Oxford Nanopore's Basecaller
https://nanoporetech.com/
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dorado v7.3.9 adapter trimming #807

Closed eesiribloom closed 4 weeks ago

eesiribloom commented 1 month ago

does dorado basecaller server v7.3.9 perform adapter /primer trimming by default?

malton-ont commented 1 month ago

Hi @eesiribloom,

No, the basecall server doesn't trim by default. You can use the flags --trim_adapters and --trim_primers (as well as `--enable_trim_barcodes) to set the appropriate trimming. Note that this is different to dorado standalone, which does trim by default.