Many fields are missing in sequencing_summary.txt generated by Dorado when we compare it to sequencing_summary.txt generated using MinKNOW.
Fields found in sequencing_summary.txt generated by Dorado:
filename
read_id
run_id
channel
mux
start_time
duration
template_start
template_duration
sequence_length_template
mean_qscore_template
barcode
Fields found in sequencing_summary.txt generated by MinKNOW:
filename
read_id
parent_read_id
run_id
batch_id
channel
mux
start_time
duration
minknow_events
passes_filtering
template_start
num_events_template
template_duration
sequence_length_template
mean_qscore_template
median_template
mad_template
scaling_median_template
scaling_mad_template
barcode_arrangement
barcode_full_arrangement
barcode_kit
barcode_variant
barcode_score
barcode_front_id
barcode_front_score
barcode_front_refseq
barcode_front_foundseq
barcode_front_foundseq_length
barcode_front_begin_index
barcode_rear_id
barcode_rear_score
barcode_rear_refseq
barcode_rear_foundseq
barcode_rear_foundseq_length
barcode_rear_end_index
barcode_mid_front_id
barcode_mid_front_score
barcode_mid_front_end_index
barcode_mid_rear_id
barcode_mid_rear_score
barcode_mid_rear_end_index
front_total_trimmed
rear_total_trimmed
Moreover, the field that contains the barcode is not the same in the two files barcode (Dorado) vs barcode_arrangement (MinKNOW) and the content of the field is slightly different: SQK-PCB111-24_barcode12 (Dorado) vs barcode12 (MinKNOW).
It will be easier for QC tools like ToulligQC (I am a developer of this software), to handle only one format of the sequencing_summary.txt file.
Issue Report
Please describe the issue:
Many fields are missing in
sequencing_summary.txtgenerated by Dorado when we compare it tosequencing_summary.txtgenerated using MinKNOW.Fields found in
sequencing_summary.txtgenerated by Dorado:Fields found in
sequencing_summary.txtgenerated by MinKNOW:Moreover, the field that contains the barcode is not the same in the two files
barcode(Dorado) vsbarcode_arrangement(MinKNOW) and the content of the field is slightly different:SQK-PCB111-24_barcode12(Dorado) vsbarcode12(MinKNOW).It will be easier for QC tools like ToulligQC (I am a developer of this software), to handle only one format of the
sequencing_summary.txtfile.Steps to reproduce the issue:
Run environment: