Whether reads are trimmed adapters when running dorado duplex

Hi,

I would like to confirm whether the reads of the output bam file (e.g. duplex_sup.bam in the below script) are trimmed adapters when running dorado duplex.

dorado version: v0.7.0

script: dorado duplex "/model/dna_r10.4.1_e8.2_400bps_sup@v5.0.0/" ./pod5/ > duplex_sup.bam

PS: If adapters of reads are not trimmed, which kinds of reads below are not trimmed?

dx:i:1 for duplex reads.
dx:i:0 for simplex reads which don't have duplex offsprings.
dx:i:-1 for simplex reads which have duplex offsprings.

But I think the default of dorado basecaller trimming is enable based on the README as described:

By default, dorado basecaller will attempt to detect any adapter or primer sequences at the beginning and ending of reads, and remove them from the output sequence.

Thank you.

nanoporetech / dorado

Whether reads are trimmed adapters when running dorado duplex #889