nanoporetech / dorado

Oxford Nanopore's Basecaller
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Request - Accessible progression information for cluster users #913

Open TristanLefebure opened 3 months ago

TristanLefebure commented 3 months ago

Dear developpers

As already discussed in issue 621, a progress bar only visible interactively (outside a log file), is not very useful when you submit your jobs to cluster. As an alternative, would it be possible to output progress information in a simpler way like a line every 100k reads in a file: "X reads basecalled out Y" ?

Thanks

Run environment:

colindaven commented 2 months ago

This kind of enhancement would also be great with dorado correct, since jobs are taking up to a week in my hands using 32 cores.