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nanoporetech / dorado

Oxford Nanopore's Basecaller
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Extremely small output after dorado correct too #968

Open yplee614 opened 1 month ago

yplee614 commented 1 month ago

I ran Dorado with the command: dorado correct -m herro-v1 filter.fq > corrected.fasta 2> log The log file shows: [2024-08-01 20:37:12.161] [info] Running: "correct" "-m" "herro-v1" "filter.fq" [2024-08-01 20:41:26.694] [info] > starting correction [2024-08-01 20:44:25.782] [info] > Corrected reads written: 16583 [2024-08-01 20:44:25.782] [info] > finished correction

The input file filter.fq is filtered by a minimum length of 10kb, and has a total size of 22GB. The output corrected.fasta file contains only 585MB of corrected reads.

Run environment:

HalfPhoton commented 1 month ago

Hi @yplee614,

Have you seen this thread? https://github.com/nanoporetech/dorado/issues/956

Kind regards, Rich