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nanoporetech
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duplex-tools
Splitting of sequence reads by internal adapter sequence search
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No FASTQ File Generated After Successful Guppy Basecalling
#56
Echo-0301
opened
2 weeks ago
0
merging original duplex bam file with the addtional split duplex bam file
#55
sgujjaBebio
opened
8 months ago
1
numpy<1.24 incompatible with python3.12
#54
jowodo
closed
10 months ago
3
split_on_adapter: Missing internal adapter/primer from the middle of the main read
#53
Gazal90
opened
11 months ago
0
Low number of good pairs after filtering
#52
myxotheles
opened
12 months ago
1
guppy_duplex ValueError: not enough values to unpack (expected 4, got 3)
#51
dkastl1
opened
1 year ago
5
split_on_adapter no more than one core?
#50
KaibondChau
closed
1 year ago
0
np.bool deprecated, package no longer works
#49
mcrone
closed
1 year ago
1
couldn't install on linux or pc
#48
readingradio
closed
10 months ago
5
issue with split_on_adapter output
#47
itslittman
opened
1 year ago
17
Unexpected base in duplex call
#46
dpaudel-tb
opened
1 year ago
4
Extracting duplex reads for multiplexed samples
#45
dpaudel-tb
opened
1 year ago
2
promethion good pairs: 0
#44
bef22
opened
1 year ago
3
question on split pairs
#43
caonetto
opened
1 year ago
3
pod5 version of duplex_tools issue
#42
gwl2
closed
1 year ago
3
split_pod5 supported seed types error
#41
mp15
opened
1 year ago
3
Positional arguments (especially seqkit_stats_nosecondary) in duplex_tools assess_split_on_adapter
#40
rocpv1977
opened
1 year ago
1
Duplicate reads and read splitting option in MinKNOW
#39
kaanokay
closed
1 year ago
9
Update dorado_stereo.sh
#38
mattloose
closed
1 year ago
2
KeyError: 'sequence_length_template' when basecalling is turned off
#37
lerminin
closed
1 year ago
2
empty output from split_pairs
#36
avilella
closed
1 year ago
5
pairs.txt file empty, but pairs_from_bam/pair_ids.txt not empty
#35
avilella
opened
1 year ago
1
split_pairs not working
#34
femiliani
closed
1 year ago
3
Update README.md
#33
cfblaeb
closed
1 year ago
1
Cannot install duplex_tools
#32
BertVanm
closed
1 year ago
2
problem with Fastx
#31
sheucke
closed
1 year ago
2
Unexpected input file name changes output file file name format on split_on_adapter
#30
groodri
opened
1 year ago
1
Question - Split on adapter
#29
jagos01
opened
1 year ago
10
Try edlib for faster duplex matching
#28
olawa
opened
1 year ago
1
filter_pairs fails if both fastq and aligned bam are present
#27
olawa
closed
1 year ago
3
config/base calling models
#26
CharlotteAnne
closed
1 year ago
2
Combining reads post duplex basecalling for assembly
#25
surabhiranavat
opened
1 year ago
5
base quality scores
#24
osilander
closed
1 year ago
4
Feature request: specify number of threads
#23
osilander
closed
1 year ago
2
Not all sub reads from multiple splits are written to FASTQ output file
#22
callumparr
closed
1 year ago
4
Split_on_adapter and sample type
#21
Thomieh73
closed
1 year ago
5
False positives in filter_pairs when run on linearized plasmid
#20
eyesmo
closed
1 year ago
4
specify custom adapters to split_on_adapter
#19
MortenEneberg
opened
2 years ago
14
Document the relationship between ont-guppy-duplex-pipeline and duplex_tools
#18
tbooth
opened
2 years ago
3
Combining split_on_adapter with duplex calling
#17
Coryza
opened
2 years ago
7
Several uncertainties
#16
claumer
closed
10 months ago
1
Fix setup metadata repo URL.
#15
cbrueffer
closed
1 year ago
1
Feature request: split_on_adapter print each alignment within a read that results in a split (multiple splits)
#14
callumparr
opened
2 years ago
5
allow multiple splits does not work with test duplication
#13
callumparr
closed
1 year ago
12
Can this split read into more than 2 subreads?
#12
callumparr
closed
2 years ago
10
Specify model?
#11
adbeggs
closed
2 years ago
1
guppy_basecaller_duplex generated six fastq files from 252 fast5 files....
#10
MostafaYA
closed
2 years ago
1
slow pairing process
#9
olawa
closed
1 year ago
21
how to use assess_split_on_adapter
#8
defendant602
closed
1 year ago
1
TypeError: mkdir() got an unexpected keyword argument 'exist_ok'
#7
defendant602
closed
1 year ago
5
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