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nanoporetech / medaka

Sequence correction provided by ONT Research
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Segmentation fault #367

Closed abeliavskaia closed 2 years ago

abeliavskaia commented 2 years ago

Hi! I am getting the Segmentation fault error at the end of the Medaka pipeline. I tried to run 'medaka_consensus' or three steps separately (mini_align, medaka consensus, medaka stitch), but it doesn't make a difference. In the case of running separate steps, the error appears at the 'stitch' step.

Any ideas on what might cause it? I found a similar issue, although couldn't find an answer there. I installed medaka with conda.

cjw85 commented 2 years ago

Hi @abeliavskaia

It helps us greatly if you can use the issue template provided. Please open a new issue supplying the requested information.