ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory #408

[marianajeeb]

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Describe the bug Hi,

I am running medaka v1.7.2 under conda environment and getting the import error.

*Logging Running medaka consensus Traceback (most recent call last): File "/home/phdstudent4/.conda/envs/maria2/bin/medaka", line 7, in <module> from medaka.medaka import main File "/home/phdstudent4/.conda/envs/maria2/lib/python3.6/site-packages/medaka/medaka.py", line 10, in <module> from medaka.inference import train, predict File "/home/phdstudent4/.conda/envs/maria2/lib/python3.6/site-packages/medaka/inference.py", line 22, in <module> from medaka.features import SampleGenerator File "/home/phdstudent4/.conda/envs/maria2/lib/python3.6/site-packages/medaka/features.py", line 23, in <module> import libmedaka ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory Failed to run medaka consensus.

Environment (if you do not have a GPU, write No GPU):

• Installation method [from conda]
• OS: [Pop!_OS 22.04 LTS]
• medaka version (medaka v1.7.2)
• No GPU

Thanks

[cjw85]

Hi @marianajeeb,

Can you confirm that your are using a conda environment bespoke to medaka? The libcrypto dependency should have been installed by conda.

If you are using a clean conda environment and installing only medaka and still having difficulties I would suggest raising and issue in the bioconda space on github

[marianajeeb]

Hi @cjw85

Thanks for your reply. I created a new conda environment and installed medaka through bioconda channel conda create -n medaka -c conda-forge -c bioconda medaka

[cjw85]

Hi @marianajeeb,

I'm not sure how you could have ended up in this situation having installed from conda. The libcrypto dependency is a indirect dependency coming from the conda package's dependency on the htslib conda package.

I think you are better off asking on the bioconda space.

[marianajeeb]

Hi @cjw85

Thanks for your reply.

I managed to solve the import error. But now I am getting another issue

RuntimeError: Filepath for '--model' argument does not exist and is not a known model ID (r941_min_fast_g383) Failed to run medaka consensus.

Could you please tell what is the issue?

Thanks

[cjw85]

The error message is correct, there is no model named r941_min_fast_g383. You can view a list of valid model names with:

medaka tools list_models