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nanoporetech / medaka

Sequence correction provided by ONT Research
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ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory #420

Closed ZON-ZONG-MIN closed 1 year ago

ZON-ZONG-MIN commented 1 year ago

I installed medaka on conda conda install -c bioconda medaka but when i use medaka instruction, I get the following error :

Traceback (most recent call last): File "/bip7_disk/zhongmin111/miniconda3/envs/env_2_25/bin/medaka", line 7, in from medaka.medaka import main File "/bip7_disk/zhongmin111/miniconda3/envs/env_2_25/lib/python3.6/site-packages/medaka/medaka.py", line 10, in from medaka.inference import train, predict File "/bip7_disk/zhongmin111/miniconda3/envs/env_2_25/lib/python3.6/site-packages/medaka/inference.py", line 22, in from medaka.features import SampleGenerator File "/bip7_disk/zhongmin111/miniconda3/envs/env_2_25/lib/python3.6/site-packages/medaka/features.py", line 23, in import libmedaka ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory

Does anyone have the same problem?

My OS: DISTRIB_ID=Ubuntu DISTRIB_RELEASE=22.04 DISTRIB_CODENAME=jammy DISTRIB_DESCRIPTION="Ubuntu 22.04.2 LTS"

cjw85 commented 1 year ago

This is related to https://github.com/bioconda/bioconda-recipes/issues/39356, not really something we can control.

You can work around this by running:

conda install -c conda-forge -c bioconda htslib==1.16

In your conda environment.

ZON-ZONG-MIN commented 1 year ago

Thank you!

Do you have a recommended python version? Or other suggestions for installing medaka

cjw85 commented 1 year ago

Python versions 3.7-3.10 are supported. Information regarding installation methods can be found in that README.