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nanoporetech / medaka

Sequence correction provided by ONT Research
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medaka_consensus outputs .fasta with option -q #464

Closed pecholleyn closed 8 months ago

pecholleyn commented 8 months ago

An output ending with ".fastq" is expected when the option "-q" ("Output consensus with per-base quality scores (fastq)") is used.

https://github.com/nanoporetech/medaka/blob/a736c21f644316ee60b093c792729112b3408d65/scripts/medaka_consensus#L159C1-L159C1

cjw85 commented 8 months ago

Hi @pecholleyn,

Thank you for reporting this. We will fix the behaviour in the next release.

cjw85 commented 8 months ago

This is fixed in v1.11.0