nanoporetech / medaka

Sequence correction provided by ONT Research
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samtools deps missing when installing with conda #468

Closed splaisan closed 7 months ago

splaisan commented 7 months ago

v1.11.1

I installed fresh today using conda and found that the installed samtools (1.18) was missing a dependency and making medaka complain about it.

you can see if you have the issue by running this

$ samtools --version
samtools: /opt/miniconda3/envs/medaka/bin/../lib/libtinfow.so.6: no version information available (required by samtools)
samtools: /opt/miniconda3/envs/medaka/bin/../lib/libncursesw.so.6: no version information available (required by samtools)
samtools: /opt/miniconda3/envs/medaka/bin/../lib/libncursesw.so.6: no version information available (required by samtools)

if you have the message you can easily fix the issue by installing ncurses with

conda install -c conda-forge ncurses