nanoporetech / medaka

Sequence correction provided by ONT Research
https://nanoporetech.com
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biocontainers issue with 1.11.2 and above #479

Closed JWDebler closed 6 months ago

JWDebler commented 6 months ago

Hi,

not exactly sure if this is the right place to report this, but as far as I'm aware the biocontainer images (https://quay.io/repository/biocontainers/medaka?tab=tags) get built automatically.

Anyhow, all versions 1.11.2 and 1.11.3 containers crash with following error:

image

I was hoping to use the latest version, but the 'official' ONT container at https://hub.docker.com/r/ontresearch/medaka/tags is currently at 1.11.1 (also, the tagging there can certainly be improved). Cheers, Johannes

cjw85 commented 6 months ago

The messy container tags stem from our continuous deployment system for Nextflow workflows (they're not really for human consumption). I'll take a look at creating a nicely named tag.

Oxford Nanopore Technologies has no affiliation or control over the biocontainers project.

cjw85 commented 6 months ago

I'm just tagging a docker image for v1.11.3 now.

JWDebler commented 6 months ago

Thanks for that, not sure if intended, but the container that hast a proper tag is only available for linux/arm64:

image

cjw85 commented 6 months ago

Oh dear, you are correct. I manually retagged the latest image with v1.11.3 on my MacBook forgetting that a) its and ARM device b) we have multiarch images.

cjw85 commented 6 months ago

I've pushed a manifest with both images tagged as v1.11.3