Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Hi,
since guppy 6.0.1 there seems to be a ont_pyguppy_client_lib-6.0.1-cp39-cp39-manylinux2014_x86_64.whl (see bottom of this page) which is for python3.9. I could successfully install megalodon in a python3.9 environment. The README file could therefore be updated:
ont-pyguppy-client-api does not currently provide a python 3.10 release, so python < 3.10 is required for use with the guppy backend.
marcus1487
commented
2 years ago
Hi, since guppy 6.0.1 there seems to be a ont_pyguppy_client_lib-6.0.1-cp39-cp39-manylinux2014_x86_64.whl (see bottom of this page) which is for python3.9. I could successfully install megalodon in a python3.9 environment. The README file could therefore be updated: