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nanoporetech / megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
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Version mismatch: Guppy version 6.0.6+8a98bbcbd #265

Closed ysuzuki1978 closed 2 years ago

ysuzuki1978 commented 2 years ago

I am trying to start an analysis of methylation, but it is not working because the version display is mismatched. Please let me know the solution.

    ERROR: Guppy version string does not match expected pattern: "b': Guppy Basecall Service Software, (C) Oxford Nanopore Technologies plc. Version 6.0.6+8a98bbcbd, client-server API version 10.1.0\n\n'"
jrhendrix commented 2 years ago

Check out issue #262 Try updating Megalodon to the newest version

ysuzuki1978 commented 2 years ago

Thank you for your comment. The version is 2.4.1 as it is installed with conda. Should I clone it from github and reinstall it?

I think one of the causes is pip install ont_pyguppy_client_lib==6.0.6

I think the command "pip install ont_pyguppy_client_lib==6.0.0.6" can specify "6.0.6" but not "6.0.6+8a98bbcbd". What do you think?

ysuzuki1978 commented 2 years ago

I installed version 2.5.0 with pip and made progress. Thank you very much.