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nanoporetech / megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
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Aggregate separated results #306

Open javiersanchezlorente opened 2 years ago

javiersanchezlorente commented 2 years ago

Hi, I have run Megalodon on different subfolders and I merged all the outputs (per_read_modified_base), as I have different reads, I want to aggregate them using megalodon_extras aggregate. Can I do it without running it again? If true, what parameters are needed?

Thank you :)

marcus1487 commented 2 years ago

I'm not sure I understand what you are trying to do. Can you give the commands that you have run and the desired output?