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nanoporetech / minknow_api

Protobuf and gRPC specifications for the MinKNOW API
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Query pore activity #47

Open mwbudde opened 1 year ago

mwbudde commented 1 year ago

Is there a way to query the pore activity? For instance, in this example I would like a way to get the attributes for [sequencing, pore, recovering, inactive, unclassified]. The goal is to be able to record the pore occupancy percentage, which should be (sequencing+recovering)/(sequencing+recovering+pore), so I can use a route if that is implemented elsewhere.

image
0x55555555 commented 1 year ago

Hi @mwbudde ,

Yes this information is all available over the API, see:

https://github.com/nanoporetech/minknow_api/blob/master/proto/minknow_api/statistics.proto for info, specifically stream_duty_time.

This provides the data from this graph.

Thanks,

mwbudde commented 1 year ago

Perfect, thanks!

On Mon, Jan 23, 2023 at 12:13 AM jorj1988 @.***> wrote:

Hi @mwbudde https://github.com/mwbudde ,

Yes this information is all available over the API, see:

https://github.com/nanoporetech/minknow_api/blob/master/proto/minknow_api/statistics.proto for info, specifically stream_duty_time.

This provides the data from this graph.

Thanks,

  • George

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