[ERROR] /bin/sh: 1: cmake: not found

nanoporetech / ont-assembly-polish

ONT assembly and Illumina polishing pipeline

Mozilla Public License 2.0

91 stars 18 forks source link

[ERROR] /bin/sh: 1: cmake: not found #20

Closed fabiodepa closed 5 years ago

fabiodepa commented 5 years ago

Hi, I run this pipeline from the docker container, after building it as detailed in the README.md provided. However, I get an error while processing because it states that cmake is not found in the path. The docker building gave me no errors so I can not understand why the pipeline did not found "cmake" while running in the container. I attached the last part of the massages before the stop.

Thank you for any help Fabio

ONT_ASSEMBLY_POLISH.txt

bsipos commented 5 years ago

Hi, cmake is needed for building racon. I have added this dependency to the Dockerfile. Please try building again.

Best, Botond