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nanoporetech / ont_fast5_api

Oxford Nanopore Technologies fast5 API software
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multi_to_single_fast5 hanging #43

Closed fbrennen closed 4 years ago

fbrennen commented 4 years ago

Sorry if I answer now, I did a couple of tests but when I start the following command: “multi_to_single_fast5 -fast5_pass -s fast5_single - - recursive -t 80” it always hangs at the same point, why ? I made some space always stopping at the same point "\ 3184 of 3585 |################ | 88% ETA: 0:44:26". What can depend on the size of my fast5_pass file? In addition, it also locks my account on the server, makes me enter the password but does not allow me to access the account, makes me wait ... maybe I should start considering the fast5 subset command?

_Originally posted by @lucio-cyber in https://github.com/nanoporetech/ont_fast5_api/issues/42#issuecomment-667687833_

fbrennen commented 4 years ago

Hi @lucio-cyber -- can you tell me a bit more? Do you see any error messages when the command hangs? Does it hang forever? How much space do you have left at that point?