--filename_base behaves differently in 'fast5_subset'

nanoporetech / ont_fast5_api

Oxford Nanopore Technologies fast5 API software

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--filename_base behaves differently in 'fast5_subset' #59

Open AAnnan opened 3 years ago

AAnnan commented 3 years ago

It does not automatically add the underscore "_" documented in note-1. I haven't tested 'demux_fast5' yet but I'll get around to it soon.

fbrennen commented 3 years ago

Hi @AAnnan -- thanks for letting us know. We'll have a look.

AAnnan commented 3 years ago

Hi @fbrennen, it looks like the underscore is also omitted in 'demux_fast5'.

It's already stated implicitly but it could be worth clarifying in the docs that 'demux_fast5' can also use as summary file the Guppy output file sequencing_summary.txt if barcoding was enabled (via the --barcode_kits argument).