I build the proper environment and get the tutorial to run but when I use my own data in the RawData and ReferenceData folders after updating the config.yaml file I am getting:
(Pinfish) -bash-4.2$ snakemake -j 1
Building DAG of jobs...
InputFunctionException in line 73 of /mnt/home/thom1524/Pinfish/Snakefile:
KeyError: 'AMC_annotation.gff.gz'
Wildcards:
unzipFile=AMC_annotation.gff.gz
It seems to me that the data I give it are not being opened or read. Any help would be much appreciated!
Hello, I am getting the error below when I execute snakemake. I have followed the tutorial instructions here: https://community.nanoporetech.com/knowledge/bioinformatics/using-pinfish-for-gene-tra/tutorial
I build the proper environment and get the tutorial to run but when I use my own data in the RawData and ReferenceData folders after updating the config.yaml file I am getting:
(Pinfish) -bash-4.2$ snakemake -j 1 Building DAG of jobs... InputFunctionException in line 73 of /mnt/home/thom1524/Pinfish/Snakefile: KeyError: 'AMC_annotation.gff.gz' Wildcards: unzipFile=AMC_annotation.gff.gz
It seems to me that the data I give it are not being opened or read. Any help would be much appreciated!