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nanoporetech / pipeline-pinfish-analysis

Pipeline for annotating genomes using long read transcriptomics data with pinfish
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Warning messages while running the pipeline #14

Closed Dan-Lt closed 4 years ago

Dan-Lt commented 4 years ago

I got the warning "[WARNING] Indexing parameters (-k, -w or -H) overridden by parameters used in the prebuilt index." in red, while running the snakemake command, my data is a directRNA fastq file and the config file has the same parameters as the defaut.

bsipos commented 4 years ago

Hello! The message is harmless, please just ignore it.

Also, this pipeline is no longer recommended for reference-based isoform analysis. Please use the newer pipeline-nanopore-ref-isoforms pipeline instead.