nanoporetech pipeline-structural-variation issues

nanoporetech / pipeline-structural-variation

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

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using pipeline-structural-variation for non-human data

#25 splaisan opened 3 years ago
0
Solving environment fails

#24 prakashraaz opened 3 years ago
0
Issue with eval target

#23 ArjenB85 opened 3 years ago
1
Is cuteSV able to read .csi index file?

#22 giuliafrascarelli opened 3 years ago
0
cuteSV nanopore parameters.

#21 humbleflowers opened 3 years ago
1
Module dependency error

#20 jimmy200340 opened 3 years ago
0
MissingRuleException error

#19 hannahgoldswain opened 3 years ago
5
ImportError: cannot import name 'parse_uri'

#18 Payam-Ebadi closed 3 years ago
5
No module named 'boto3'

#17 Payam-Ebadi opened 3 years ago
1
VCF output not reporting translocations/inversions/duplications

#16 damioresegun opened 3 years ago
2
Start pipeline from VCF file

#15 ndierckx opened 3 years ago
0
Deprecated option in Snakefile `call_sniffles`

#14 sotakan opened 4 years ago
0
_sniffles_filtered.vcf.gz no vcf headers

#13 ggrimes opened 4 years ago
0
Update dependencies

#12 philres closed 4 years ago
0
Version 1.6.0

#11 philres closed 4 years ago
0
trouble installing pipeline

#10 l-yampolsky opened 4 years ago
7
Why the 'REF' column of 'my_sample_sniffles.vcf' is consists of "N"

#9 weir12 closed 4 years ago
2
snakemake: init error > output files

#8 Wildstrubu closed 4 years ago
0
mosdepth not found due to dependency issue

#7 ashrosewood opened 4 years ago
1
snakemake install failure

#6 chansnotes opened 4 years ago
2
pipeline cannot access .py scripts at `/home/user/pipeline-structural-variation-1.2.0/lib/pipeline_structural_variation`

#5 BCArg opened 4 years ago
3
Question about the SV pipeline

#4 mldmort opened 5 years ago
1
Check config values on invocation

#3 philres opened 5 years ago
0
Tutorial eds

#2 sagrudd closed 5 years ago
1
pipeline installation fails

#1 kamalfartiyal84 opened 5 years ago
7