Porblems with snakefile. WorkflowError in line 7.

nanoporetech / pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

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Porblems with snakefile. WorkflowError in line 7. #12

Closed hqs10 closed 4 years ago

hqs10 commented 4 years ago

Hi all,

Having the following issue with the workflow:

tardig@DESKTOP-NEKU62R:~/pipeline-transcriptome-de$ snakemake --use-conda -j 4 all WorkflowError in line 7 of /home/tardig/pipeline-transcriptome-de/Snakefile: Config file is not valid JSON or YAML. In case of YAML, make sure to not mix whitespace and tab indentation. File "/home/tardig/pipeline-transcriptome-de/Snakefile", line 7, in

Please find snakefile and config files attached.

config.txt

Snakefile.txt

Thanks,

Stan

m-noonan commented 1 year ago

I'm having this same issue, how did you resolve this?