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nanoporetech / pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
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plot_dtu_res error #22

Closed rebeelouise closed 3 years ago

rebeelouise commented 4 years ago

All good til the last moment...

Does anyone have any experience as to what is throwing this error?

Config file looks fine...

`Error in rule plot_dtu_res: jobid: 26 output: de_analysis/dtu_plots.pdf shell:

home/pipeline-transcriptome-de/scripts/plot_dtu_results.R

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message`

bsipos commented 3 years ago

Hello! Could you please include the command line you have run and more details from the error message?

sagrudd commented 3 years ago

@bsipos - I have been able to replicate this issue and have a fix; I'll create a PR later today for this - final testing now