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nanoporetech / pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
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Snakefile AttributeError #36

Open m-noonan opened 1 year ago

m-noonan commented 1 year ago

I got this error while starting to run this pipeline, any ideas how to fix?

AttributeError in line 6 of /home/data/Megan/nanopore/pipeline-transcriptome-de/Snakefile: 'Workflow' object has no attribute 'overwrite_configfiles' File "/home/data/Megan/nanopore/pipeline-transcriptome-de/Snakefile", line 6, in

sarahjeeeze commented 1 year ago

Hi, It might be worth trying the more up to date Nextflow workflow, which contains the same differential expression analysis. https://github.com/epi2me-labs/wf-transcriptomes#differential-expression you can also access it through the EPI2MELabs desktop app which you can download for free here https://labs.epi2me.io/downloads