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nanoporetech / pipeline-umi-amplicon

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
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Error: no Snakefile found #12

Open dieunelderilus opened 3 years ago

dieunelderilus commented 3 years ago

Hello- I am getting a strange error when trying to run snakemake >

Command line used: snakemake -j 30 reads --config input_fastq=barcode01/ reference_fasta=cds.fa

error message: Error: no Snakefile found, tried Snakefile, snakefile, workflow/Snakefile, workflow/snakefile.

Please any help?

Cheers, ~DD

rob234king commented 2 years ago

if run from the folder location of the installation then it will find the snakefile and put the output into the same folder too.