Error in rule filter_reads:

[Rabisazia1]

Hi, I am trying to run the pipeline with command " snakemake -j 30 variants --configfile config.yml" and I have a directory with my long reads fastq.gz files, I am getting this error: Error in rule filter_reads: jobid: 10 input: pteres output: cyp51A_read_run/read.filt.fastq.gz, cyp51A_read_run/09_stats/01_reads_stats.txt shell:

    printf 'Total reads in file pre filtering: ' 2>&1 | tee cyp51A_read_run/09_stats/01_reads_stats.txt
    if [[ pteres =~ \.gz$ ]]
    then
        zcat pteres | echo $((`wc -l`/4)) 2>&1 | tee -a cyp51A_read_run/09_stats/01_reads_stats.txt
    else
        cat pteres | echo $((`wc -l`/4)) 2>&1 | tee -a cyp51A_read_run/09_stats/01_reads_stats.txt
    fi

    if [[ True == "True" ]]
    then
        filtlong --min_length 200 --min_mean_q 50 pteres | gzip > cyp51A_read_run/read.filt.fastq.gz
        printf 'Total reads in file post filtering: ' 2>&1 | tee -a cyp51A_read_run/09_stats/01_reads_stats.txt
        zcat cyp51A_read_run/read.filt.fastq.gz | echo $((`wc -l`/4)) 2>&1 | tee -a cyp51A_read_run/09_stats/01_reads_stats.txt
    else
        cp pteres cyp51A_read_run/read.filt.fastq.gz
    fi

    (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

Thanks!