Allowing user input for UMIs and context

nanoporetech / pipeline-umi-amplicon

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

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Allowing user input for UMIs and context #8

Closed SemiQuant closed 3 years ago

SemiQuant commented 3 years ago

Hi,

I added options so that the user can specify the UMI sequences (using IUPAC), the min/max length of the combined UMIs (for search), and the context sequences surrounding the UMIs. If the user changes nothing, this will run as it did before.

cjw85 commented 3 years ago

Hi @SemiQuant,

Thanks for this!