search

nanoporetech / pod5-file-format

Pod5: a high performance file format for nanopore reads.
https://pod5-file-format.readthedocs.io/
Other
137 stars 18 forks source link

No way to demultiplex pod5 files. #55

Closed rjmat97 closed 1 year ago

rjmat97 commented 1 year ago

Hi,

Is there any way to directly demultiplex pod5 files like how you can with fast5 files?

Im currently converting pod5 > fast5 and then then back to pod5 after demultiplexing fast5.

Thankyou

Psy-Fer commented 1 year ago

Hey, have you looked at pod5 subset?

Search for it here.

https://github.com/nanoporetech/pod5-file-format/blob/master/python/pod5/README.md

That should do what you are looking for.

HalfPhoton commented 1 year ago

There's also documentation on ReadTheDocs

Do you need further support with this issue?

rjmat97 commented 1 year ago

Thankyou