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nanoporetech / pomoxis

Analysis components from Oxford Nanopore Research
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dependency on numpy 1.9.0 makes the build process take a long time.. #14

Closed jamestwebber closed 6 years ago

jamestwebber commented 6 years ago

I'm building an Amazon image using packer and running into issues with my build timing out. As I work on solving this problem, it occurs to me to ask: is there any way to remove this dependency? This version of numpy has to be compiled, and compiling all of numpy takes a long time, so updating whatever code is relying on this would make the process go much faster.

It's probably a good idea anyway, as being tied to a specific outdated version of a package is not a good sign...

If anyone knows what is causing this dependency I can try to write a PR to update the code.

cjw85 commented 6 years ago

Apologies, the numpy version should no longer be pinned to 1.9.0. It looks like we changed the requirements file but neglected the entry in the Makefile.