numpy 1.14.2 is installed but numpy<=1.13.3 is required by {'fast5-research'}

nanoporetech / pomoxis

Analysis components from Oxford Nanopore Research

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numpy 1.14.2 is installed but numpy<=1.13.3 is required by {'fast5-research'} #18

Closed MMicorescu closed 6 years ago

MMicorescu commented 6 years ago

Getting the following even during install even though I downgraded to numpy 1.13.3:

Installed /root/git/pomoxis/venv/lib/python3.5/site-packages/pomoxis-0.1.7-py3.5.egg Processing dependencies for pomoxis==0.1.7 error: numpy 1.14.2 is installed but numpy<=1.13.3 is required by {'fast5-research'} Makefile:71: recipe for target 'install' failed make: *** [install] Error 1

cjw85 commented 6 years ago

pip's dependency resolution is well known to be inadequate (https://github.com/pypa/pip/issues/988). I've pinned the version of numpy in pomoxis to correspond to that required by fast5-research to sidestep the issue.