reference contigs without restriction sites cause fragment_id skipping

nanoporetech / pore-c

Pore-C support

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reference contigs without restriction sites cause fragment_id skipping #24

Closed proinde closed 5 years ago

proinde commented 5 years ago

This behaviour is seen both when using the biopython based code (i.e. when the restriction enzyme used is specified by name) as well as if specified by regex. Sweeping the outputted file and replacing the fragment_id with an incremental value fixes the problem.