Question: Model for R10 flow cell and (meta)transcriptomics

nanoporetech / rerio

Research release basecalling models and configurations

https://nanoporetech.com/

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Question: Model for R10 flow cell and (meta)transcriptomics #8

Closed VGalata closed 3 years ago

VGalata commented 3 years ago

Hello,

We wanted to use the R10 flow cells for metagenomics and metatranscriptomics analysis. Does one need a dedicated model file for the transcriptomics data?

Thank you very much in advance!

Best, Valentina

susheelbhanu commented 3 years ago

Hi @tmassingham-ont ,

I'm wondering the same thing because we are interested in running transcriptomics using the R10 flowcells, but did not find the respective model for this purpose.

Thank you for your help! -Susheel

marcus1487 commented 3 years ago

If the transcriptomics data is cDNA, then the released R10 model is applicable. I don't believe direct RNA on R10 flowcells is currently supported.

VGalata commented 3 years ago

Dear @marcus1487, thank you very much!