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nanoporetech / taiyaki

Training models for basecalling Oxford Nanopore reads
https://nanoporetech.com/
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Pretrained model for RNA? #76

Open HirokiU-RCAST opened 4 years ago

HirokiU-RCAST commented 4 years ago

Hi.

I found there is pretrained model for DNA model under

/models/mGru_flipflop_remapping_model_r9_DNA.checkpoint

but, is there any RNA model (model weight, or check point) for RNA?

Thanks In advance.

Hiroki

tjakobi commented 4 years ago

Hi @HirokiU-RCAST,

there are RNA models available in the tutorial for modified basescalling:

https://github.com/nanoporetech/taiyaki/blob/master/docs/modbase.rst#download-and-unpack-training-data

pretrained (pre-trained models used for mapping reads)
r941_dna_minion.checkpoint
r941_rna_minion.checkpoint