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nanoporetech / tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
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Alignments visualization #299

Open fanavarro opened 3 years ago

fanavarro commented 3 years ago

Hi all and thanks for your work. According to the documentation, "The first step in any Tombo analysis is to re-squiggle (raw signal to reference sequence alignment) raw nanopore reads. This creates an index and stores the raw signal alignments necessary to perform downstream analyses".

I am wondering if it would be possible to obtain the alignments found by tombo in BAM or SAM format so they could be checked in other software like IGV.

Thanks in advance.

marcus1487 commented 3 years ago

This feature is not currently available in Tombo.