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nanoporetech / tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
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How could i analaysis cp_alt_6mA_model.difference.minus.wig #353

Open Bessyyi opened 3 years ago

Bessyyi commented 3 years ago

Hello,dear teacher! I run the command "tombo detect_modifications alternative_model --fast5-basedirs /home/ywj/fang_lab/NAT_single_fast5/ --alternate-fast5-basedirs /home/ywj/fang_lab/WGA_single_fast5/ --alternate-bases 6mA --statistics-file-basename CP.level_compare_6mA_sample" and "tombo text_output browser_files --fast5-basedirs /home/ywj/fang_lab/NAT_single_fast5 --statistics-filename /home/ywj/tombo/output/CP.level_compare_6mA_sample.6mA.tombo.stats --browser-file-basename cp_alt_6mA_all_model --file-types dampened_fraction".Then i get the file showing in the picture .How could i analaysis them and could i get methylation information by them . 1

marcus1487 commented 3 years ago

The file outputs are described in the docs here.