issues
search
nanovis
/
DiffFit
DiffFit: Visually-Guided Differentiable Fitting of Molecule Structures to Cryo-EM Map
Other
6
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Pip manager
#41
RodenLuo
closed
6 days ago
0
Automatically install CUDA enabled version of PyTorch on Windows
#40
RodenLuo
closed
6 days ago
5
Add dependencies' versions
#39
RodenLuo
closed
1 week ago
0
Gaussian negative space mode switch
#38
RodenLuo
closed
3 weeks ago
0
Install error: `fbgemm.dll` not found
#37
RodenLuo
closed
1 week ago
2
UI changes apply to VIS-2024 reproducibility branch
#36
RodenLuo
closed
1 month ago
0
UI changes apply to VIS-2024 reproducibility branch
#35
RodenLuo
closed
1 month ago
0
First interactive, then compute, has a bug
#34
RodenLuo
closed
1 month ago
0
Use only backbone; pose initialization bugs cleared
#33
RodenLuo
closed
1 month ago
0
Window initialization bug
#32
RodenLuo
opened
3 months ago
2
ChimeraX camera right vector needed
#31
RodenLuo
closed
3 months ago
2
A decent fitting result cluster's point cloud viewer
#30
RodenLuo
closed
3 months ago
0
Cluster viewer bug and enhancement
#29
RodenLuo
closed
3 months ago
0
updated fitting result cluster visualizer
#28
RodenLuo
closed
3 months ago
0
DiffFit command interface is needed for CI/CD and automatic benchmarking
#27
RodenLuo
opened
3 months ago
0
Metrics precision
#26
RodenLuo
closed
3 months ago
1
Point cloud
#25
RodenLuo
closed
4 months ago
0
Click a row in the fitting result table for the second time will show a different tranformation
#24
RodenLuo
closed
5 months ago
0
DiffFit fitting result is not exactly the same as ChimeraX's Fit in Map
#23
RodenLuo
opened
5 months ago
0
Check the details of ChimeraX's fitting results clustering algorithm and align DiffFit's with it or just use it
#22
RodenLuo
closed
3 months ago
5
The first run is slightly longer than the subsequent runs
#21
RodenLuo
opened
5 months ago
0
Asterisk unpacking in numpy array indexing requires ChimeraX 1.7 which uses Python 3.11
#20
RodenLuo
opened
6 months ago
0
Qt QHBoxLayout for "Single" tab
#19
RodenLuo
closed
5 months ago
1
`v.writable_copy().matrix().sum()` is different from `v.matrix().sum()`
#18
RodenLuo
closed
6 months ago
2
Random placement initializations
#17
RodenLuo
closed
6 months ago
5
Volume matrix accessing and modifying
#16
RodenLuo
opened
6 months ago
11
Threshold the fit results on the atom's map occupance before clustering
#15
RodenLuo
opened
6 months ago
0
Get ChimeraX data structurea and Gaussian smoothing to DiffFit
#14
RodenLuo
closed
4 months ago
4
New translation initialization
#13
RodenLuo
opened
6 months ago
1
Consider using "envelope sampling" or "cover sampling" in paper writing instead of "adaptive sampling"
#12
RodenLuo
closed
4 months ago
2
Package DiffFit as a standard Python wheel
#11
RodenLuo
closed
5 months ago
4
Record tutorial videos for install, compute, view
#10
RodenLuo
opened
7 months ago
1
Write the doc
#9
RodenLuo
closed
7 months ago
0
Change the tool nav to "Tools > Volume Data" instead of "Tools > General"
#8
RodenLuo
closed
7 months ago
0
Expose `shift_tolerance` and `angle_tolerance`
#7
RodenLuo
closed
7 months ago
1
Use the iter with the largest correlation when clustering
#6
RodenLuo
closed
7 months ago
1
Speedup `cluster_and_sort_sqd`
#5
RodenLuo
closed
7 months ago
1
Zeroing out the already fitted density | Find the API for `subtracting the density`
#4
RodenLuo
closed
4 months ago
12
Buttons for DiffFit Viewer
#3
RodenLuo
closed
7 months ago
5
corrected correlation idx; look_at_MQS_idx
#2
RodenLuo
closed
7 months ago
0
Install DiffFit to ChimeraX
#1
RodenLuo
closed
7 months ago
3