Closed jwLuo6413 closed 5 months ago
aperrin66
commented
5 months ago Hi @jwLuo6413, can you export your anaconda environment (see instructions here) and attach the environment.yml file in this conversation, so that I can try to reproduce that error?
jwLuo6413
commented
5 months ago @aperrin66 Thanks for your kindness :). Details about "environment.yml" shows below:
name: py3nansat channels:
aperrin66
commented
5 months ago Your issue does look like you need to update the pythesint data. However, I am unable to reproduce the segmentation fault you get (if that is the error you get, I had to use google translate for this one).
Can you try to remove all pythesint data (in ~/.local/share/pythesint/ by default) and run the following after making sure your anaconda environment is activated?
python -c 'import pythesint;pythesint.update_all_vocabularies()'
jwLuo6413
commented
5 months ago @aperrin66 Thanks for your help and now I can use "Nansat" package normally. Actually, I still encounter another issue when I type "python -c 'import pythesint;pythesint.update_all_vocabularies()'" in the command line after activating 'py3nansat' environment. it shows below:
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /nansencenter/nersc-vocabularies/master/nansat_wkv.yml (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f9428fd3450>: Failed to establish a new connection: [Errno 111] Connection refused'))
It seems that this error associated with host 'raw.githubusercontent.com' connection, I solved this issue by searching its corresponding ipv4 address and added this address and host name in "hosts" file, which should be located in "C:\Windows\System32\drivers\etc\" directory in wIndows system.
Hope my problem-solving journey can benefit others who could come across the same issue like me in the future. Thanks again!
I follow the instructions following this link: https://github.com/nansencenter/nansat/blob/master/docs/source/installation.rst. After installing nansat and its optional packages, I try to use nansat read sentinel-1 zip file and Geotiff file. Both of them give me the same error like this:
Traceback (most recent call last): File "", line 1, in
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/nansat/nansat.py", line 156, in init
self.vrt = self._get_mapper(mapper, kwargs)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/nansat/nansat.py", line 1157, in _get_mapper
tmp_vrt = nansatMappers[iMapper](self.filename, gdal_dataset, metadata, kwargs)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/nansat/mappers/mapper_sentinel1_l1.py", line 185, in init
self.create_bands(metaDict)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/nansat/vrt.py", line 926, in create_bands
self.create_band(src, dst)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/nansat/vrt.py", line 1007, in create_band
dst['name'], wkv = self._create_band_name(dst)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/nansat/vrt.py", line 706, in _create_band_name
wkv_pti = pti.get_wkv_variable(str(wkv_dst))
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/pythesint/vocabulary.py", line 45, in find_keyword
for d in self.get_list():
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/site-packages/pythesint/json_vocabulary.py", line 22, in get_list
result = json.load(opened_file)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/json/init.py", line 296, in load
parse_constant=parse_constant, object_pairs_hook=object_pairs_hook, **kw)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/json/init.py", line 348, in loads
return _default_decoder.decode(s)
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/json/decoder.py", line 337, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/home/ljw/miniconda3/envs/py3nansat/lib/python3.7/json/decoder.py", line 355, in raw_decode
raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
I think maybe this relates with "pythesint", so I try to update local JSON vocabularies following this link: https://github.com/nansencenter/py-thesaurus-interface/tree/master. But when I try to run "import pythesint as pti; pti.update_cf_standard_name(version='20210119T185509')" or "import pythesint as pti; pti.update_cf_standard_name()", it gives me error like this: Downloading and writing json file for cf_standard_name /home/ljw/.local/share/pythesint/json 段错误
Can anyone give me some hints about this? How to fix it?